Factsheet for HORVU6Hr1G002520.13

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G016300.1
HORVU5Hr1G121540.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10710.1	HORVU2Hr1G016300.1	AT1G09270.1	21798944
AT5G10710.1	HORVU5Hr1G121540.1	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G002620.4	Barley	cytosol	58.14	100.0
TraesCS3D01G493500.1	Wheat	cytosol, extracellular, plastid	31.98	92.44
TraesCS6B01G020300.2	Wheat	nucleus	90.99	92.06
TraesCS6A01G013400.1	Wheat	cytosol	90.41	91.74
TraesCS6D01G016500.1	Wheat	cytosol	90.12	91.45
KXG38548	Sorghum	cytosol	76.16	82.65
Zm00001d032978_P001	Maize	cytosol	31.98	70.97
GSMUA_AchrUn_...	Banana	cytosol	33.72	69.05
VIT_04s0008g02440.t01	Wine grape	nucleus	61.05	64.42
Os04t0284100-01	Rice	cytosol	20.06	63.89
PGSC0003DMT400004637	Potato	cytosol	59.59	63.66
Solyc08g077520.2.1	Tomato	cytosol, nucleus	58.43	62.42
KRH61930	Soybean	nucleus	58.43	56.46
KRH52593	Soybean	nucleus	56.98	55.68
AT5G10710.1	Thale cress	cytosol	47.38	52.24
CDX78396	Canola	endoplasmic reticulum, golgi	51.16	51.16
GSMUA_AchrUn_...	Banana	cytosol	21.8	49.67
CDX70366	Canola	endoplasmic reticulum, extracellular, golgi	51.16	49.44
Bra006073.1-P	Field mustard	endoplasmic reticulum	50.87	48.08

Protein Annotations

EnsemblPlants:HORVU6Hr1G002520.13	EnsemblPlantsGene:HORVU6Hr1G002520	GO:GO:0000776	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0034508	InterPro:CENP-O	PANTHER:PTHR14582
PFAM:PF09496	UniParc:UPI000B4858D7	UniProt:A0A287T586	MapMan:35.2	:	:

Description

No Description!

Coordinates

chrchr6H:+:6545619..6551875

Molecular Weight (calculated)

39753.4 Da

IEP (calculated)

5.823

GRAVY (calculated)

-0.484

Length

344 amino acids

Sequence
(BLAST)

001: AGLGPDGPLR HAGPELPHGE HGEQLRRRQH SLSELTYSRD DDAKLETTRA RLLGVLKRHE DLKERLSRDS DKLIFERLQK EFEAARVAQT EEISIDDEQW
101: NDGLLATIRE KVHIEAERKA MVNPGNVPTD SEFQSRTTYR IRNKVIYCLD GARIGIQYET FFAGEPCEIY HCVLESKSFL EKMTVIQHTL PFFLPIREVE
201: TEHLSSNAIK FIDHLEEILQ SYIDRREQVR LIKELYGNQI GELFHSLPYT LIEFTLEDFE CKVTVSIRYS DLILTLPSQA RVLAWPLRSA KRISTADRRA
301: QPVPSRLSYA ENALKTLSLP EAYAEIVLEL PRALKQMFYS QESD

Best Arabidopsis Sequence Match ( AT5G10710.1 )
(BLAST)

001: MGEMIVSMDQ DIRLDTTRAR LSNLLKRHRE LSDRLTRDSD KTMLDRLNKE FEAARRSQSQ EVFLDGEEWN DGLLATLRER VHMEADRKAD NGNAGFSLVC
101: HPEERITYRV GNKVICCLDG SRIGIQFETS TAGETYEVYH CVLESKSFLE KMIVLEHTIP FFLPLSDLEN DLLFSNAKKF IDNVGDLLQA YVDRKEQVRL
201: IKELFGHQIS EIYHSLPYHM IEFSMDDCDC KFVVSLRYGD LLCELPTKVR ILVWPMHHLS KKQCTSPGSP AIPVRLPFAE DAFRIQSLPE AYAEIMPNMP
301: NEIRQLFQTS PS

Arabidopsis Description

Centromere protein O [Source:UniProtKB/TrEMBL;Acc:Q8GUP4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.