Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr8P22290_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10710.1 | GSMUA_Achr8P22290_001 | AT1G09270.1 | 21798944 |
| AT5G10710.1 | GSMUA_AchrUn_... | AT4G24840.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0284100-01 | Rice | cytosol | 41.72 | 58.33 |
| Zm00001d032978_P001 | Maize | cytosol | 53.64 | 52.26 |
| VIT_04s0008g02440.t01 | Wine grape | nucleus | 56.29 | 26.07 |
| KXG38548 | Sorghum | cytosol | 52.98 | 25.24 |
| PGSC0003DMT400004637 | Potato | cytosol | 49.67 | 23.29 |
| Solyc08g077520.2.1 | Tomato | cytosol, nucleus | 49.67 | 23.29 |
| TraesCS6A01G013400.1 | Wheat | cytosol | 51.66 | 23.01 |
| TraesCS6D01G016500.1 | Wheat | cytosol | 51.66 | 23.01 |
| TraesCS6B01G020300.2 | Wheat | nucleus | 50.99 | 22.65 |
| AT5G10710.1 | Thale cress | cytosol | 46.36 | 22.44 |
| HORVU6Hr1G002520.13 | Barley | cytosol, nucleus | 49.67 | 21.8 |
| KRH61930 | Soybean | nucleus | 49.67 | 21.07 |
| KRH52593 | Soybean | nucleus | 49.01 | 21.02 |
| CDX78396 | Canola | endoplasmic reticulum, golgi | 43.05 | 18.9 |
| CDX70366 | Canola | endoplasmic reticulum, extracellular, golgi | 43.05 | 18.26 |
| Bra006073.1-P | Field mustard | endoplasmic reticulum | 43.71 | 18.13 |
| HORVU6Hr1G002620.4 | Barley | cytosol | 1.99 | 1.5 |
| GSMUA_AchrUn_... | Banana | cytosol | 0.0 | 0.0 |
| TraesCS3D01G493500.1 | Wheat | cytosol, extracellular, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP12730_001 | EnsemblPlants:GSMUA_AchrUn_randomT12730_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG12730_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| ncoils:Coil | PANTHER:PTHR14582 | TMHMM:TMhelix | UniParc:UPI000294D05B | UniProt:M0U8N2 | MapMan:35.2 |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG12730_001]
Coordinates
chrchrUn_random:-:61235768..61240140
Molecular Weight (calculated)
17662.2 Da
IEP (calculated)
8.213
GRAVY (calculated)
-0.415
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNNYPCFFN PCSKFAQEED IRLETTRARL SNVLKRHEEL KERLSRDSDK MIFERLQKEF EAARAAQSEE ISLDGEQWND GLLATIRERV HMEADRKAIS
101: SQTSTPLDPP IHAKITYKIK NKVFLYLGYH VLLLAKVYFN SFTVFNIVAL Y
101: SQTSTPLDPP IHAKITYKIK NKVFLYLGYH VLLLAKVYFN SFTVFNIVAL Y
001: MGEMIVSMDQ DIRLDTTRAR LSNLLKRHRE LSDRLTRDSD KTMLDRLNKE FEAARRSQSQ EVFLDGEEWN DGLLATLRER VHMEADRKAD NGNAGFSLVC
101: HPEERITYRV GNKVICCLDG SRIGIQFETS TAGETYEVYH CVLESKSFLE KMIVLEHTIP FFLPLSDLEN DLLFSNAKKF IDNVGDLLQA YVDRKEQVRL
201: IKELFGHQIS EIYHSLPYHM IEFSMDDCDW LAIS
101: HPEERITYRV GNKVICCLDG SRIGIQFETS TAGETYEVYH CVLESKSFLE KMIVLEHTIP FFLPLSDLEN DLLFSNAKKF IDNVGDLLQA YVDRKEQVRL
201: IKELFGHQIS EIYHSLPYHM IEFSMDDCDW LAIS
Arabidopsis Description
Centromere protein O [Source:UniProtKB/TrEMBL;Acc:Q8GUP4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.