Factsheet for TraesCS6B01G020300.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G097100.1
TraesCS2B01G112400.2
TraesCS2D01G096200.1
TraesCS4A01G335400.1
TraesCS5B01G549700.1
TraesCS5D01G536700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10710.1	TraesCS2A01G097100.1	AT1G09270.1	21798944
AT5G10710.1	TraesCS2B01G112400.2	AT1G09270.1	21798944
AT5G10710.1	TraesCS2D01G096200.1	AT1G09270.1	21798944
AT5G10710.1	TraesCS4A01G335400.1	AT4G24840.1	21798944
AT5G10710.1	TraesCS5B01G549700.1	AT4G24840.1	21798944
AT5G10710.1	TraesCS5D01G536700.1	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G016500.1	Wheat	cytosol	97.65	97.94
TraesCS6A01G013400.1	Wheat	cytosol	97.65	97.94
HORVU6Hr1G002620.4	Barley	cytosol	57.35	97.5
TraesCS3D01G493500.1	Wheat	cytosol, extracellular, plastid	32.35	92.44
HORVU6Hr1G002520.13	Barley	cytosol, nucleus	92.06	90.99
KXG38548	Sorghum	cytosol	76.18	81.7
Zm00001d032978_P001	Maize	cytosol	32.06	70.32
GSMUA_AchrUn_...	Banana	cytosol	33.82	68.45
Os04t0284100-01	Rice	cytosol	20.88	65.74
PGSC0003DMT400004637	Potato	cytosol	61.47	64.91
VIT_04s0008g02440.t01	Wine grape	nucleus	62.06	64.72
Solyc08g077520.2.1	Tomato	cytosol, nucleus	60.29	63.66
KRH61930	Soybean	nucleus	59.41	56.74
KRH52593	Soybean	nucleus	58.24	56.25
AT5G10710.1	Thale cress	cytosol	47.94	52.24
GSMUA_AchrUn_...	Banana	cytosol	22.65	50.99
CDX78396	Canola	endoplasmic reticulum, golgi	51.47	50.87
CDX70366	Canola	endoplasmic reticulum, extracellular, golgi	52.06	49.72
Bra006073.1-P	Field mustard	endoplasmic reticulum	51.18	47.8

Protein Annotations

EnsemblPlants:TraesCS6B01G020300.2	EnsemblPlantsGene:TraesCS6B01G020300	GO:GO:0000776	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0034508	InterPro:CENP-O	ncoils:Coil
PANTHER:PTHR14582	PFAM:PF09496	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr6B:-:12593401..12599239

Molecular Weight (calculated)

39559.2 Da

IEP (calculated)

5.693

GRAVY (calculated)

-0.427

Length

340 amino acids

Sequence
(BLAST)

001: MDLSVTLALS SPTEHGEQLR RRQHSLSELT YARDEDATKL ETTRARRMLN VLKRHEDLKE RLSRDSDKLI FERLQKEFEA ARVAQTEEIS IDDEQWNDGL
101: LATIREKVHI EAERKAMVNL ANVPTDSQFQ SRTTYRIRNK VIYCLDGARI GIQYETFFAG EPCEIYHCVL ESKSFLEKMT VTEHTLPFFL PIREVETEHL
201: SSNAIRFIDH LEEILQSYID RREQVRLIKE LYGNQIGELF HSLPYTLIEF TLEDFECKVT VSIRYSDLIL TLPSQARVLA WPLRSAKRIS AADRRAQPVP
301: SRLSYAESAL KTLSLPEAYA EIVLELPRAL KQMFYSQESD

Best Arabidopsis Sequence Match ( AT5G10710.1 )
(BLAST)

001: MGEMIVSMDQ DIRLDTTRAR LSNLLKRHRE LSDRLTRDSD KTMLDRLNKE FEAARRSQSQ EVFLDGEEWN DGLLATLRER VHMEADRKAD NGNAGFSLVC
101: HPEERITYRV GNKVICCLDG SRIGIQFETS TAGETYEVYH CVLESKSFLE KMIVLEHTIP FFLPLSDLEN DLLFSNAKKF IDNVGDLLQA YVDRKEQVRL
201: IKELFGHQIS EIYHSLPYHM IEFSMDDCDC KFVVSLRYGD LLCELPTKVR ILVWPMHHLS KKQCTSPGSP AIPVRLPFAE DAFRIQSLPE AYAEIMPNMP
301: NEIRQLFQTS PS

Arabidopsis Description

Centromere protein O [Source:UniProtKB/TrEMBL;Acc:Q8GUP4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.