Factsheet for PGSC0003DMT400004637

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007130
PGSC0003DMT400067640

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10710.1	PGSC0003DMT400007130	AT1G09270.1	21798944
AT5G10710.1	PGSC0003DMT400067640	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g077520.2.1	Tomato	cytosol, nucleus	96.27	96.27
VIT_04s0008g02440.t01	Wine grape	nucleus	74.22	73.31
GSMUA_AchrUn_...	Banana	cytosol	36.96	70.83
HORVU6Hr1G002620.4	Barley	cytosol	43.17	69.5
KRH61930	Soybean	nucleus	72.05	65.17
KRH52593	Soybean	nucleus	70.81	64.77
KXG38548	Sorghum	cytosol	61.18	62.15
AT5G10710.1	Thale cress	cytosol	59.63	61.54
TraesCS6B01G020300.2	Wheat	nucleus	64.91	61.47
TraesCS6D01G016500.1	Wheat	cytosol	64.29	61.06
TraesCS6A01G013400.1	Wheat	cytosol	63.98	60.77
TraesCS3D01G493500.1	Wheat	cytosol, extracellular, plastid	22.36	60.5
HORVU6Hr1G002520.13	Barley	cytosol, nucleus	63.66	59.59
CDX78396	Canola	endoplasmic reticulum, golgi	60.87	56.98
CDX70366	Canola	endoplasmic reticulum, extracellular, golgi	62.11	56.18
Bra006073.1-P	Field mustard	endoplasmic reticulum	60.87	53.85
Zm00001d032978_P001	Maize	cytosol	25.16	52.26
GSMUA_AchrUn_...	Banana	cytosol	23.29	49.67
Os04t0284100-01	Rice	cytosol	15.84	47.22

Protein Annotations

EnsemblPlants:PGSC0003DMT400004637	EnsemblPlantsGene:PGSC0003DMG400001838	EntrezGene:102584549	GO:GO:0000776	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0034508	InterPro:CENP-O
PANTHER:PTHR14582	PFAM:PF09496	PGSC:PGSC0003DMG400001838	RefSeq:XP_006358621.1	UniParc:UPI0002950815	UniProt:M0ZNR0
MapMan:35.2	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400001838]

Coordinates

chr8:-:50545913..50553410

Molecular Weight (calculated)

36660.8 Da

IEP (calculated)

5.934

GRAVY (calculated)

-0.334

Length

322 amino acids

Sequence
(BLAST)

001: MGEVNYTREE DVKLDAVRAR FSNVLKRHSE LAERLSRDSD KSIFDRLQKE FEAARASQTQ ELILKGEQWN DGLLATIRER VHMEAERKAM QMPGDTTQLP
101: IPFHDKITYK VGNKVICCLD GARIGIQYDT SFAGESCDLY HCVLESKSFL EKMTVLEHTV PFFLPIREAE NEFLSSNAIR FIDHVGDLLQ AYVDRREQVR
201: LIKELYGNQI GELYHSLPYH MIEFVIEDFD SKVTVSLRYA DLISTLPTGV SVLAWPMHQS KKSSDKIAPH LKGNGVGSHP IPARLTYAED ALRTMSLPEA
301: YAEIVLNLPQ ALQDMFPHTS ST

Best Arabidopsis Sequence Match ( AT5G10710.1 )
(BLAST)

001: MGEMIVSMDQ DIRLDTTRAR LSNLLKRHRE LSDRLTRDSD KTMLDRLNKE FEAARRSQSQ EVFLDGEEWN DGLLATLRER VHMEADRKAD NGNAGFSLVC
101: HPEERITYRV GNKVICCLDG SRIGIQFETS TAGETYEVYH CVLESKSFLE KMIVLEHTIP FFLPLSDLEN DLLFSNAKKF IDNVGDLLQA YVDRKEQVRL
201: IKELFGHQIS EIYHSLPYHM IEFSMDDCDC KFVVSLRYGD LLCELPTKVR ILVWPMHHLS KKQCTSPGSP AIPVRLPFAE DAFRIQSLPE AYAEIMPNMP
301: NEIRQLFQTS PS

Arabidopsis Description

Centromere protein O [Source:UniProtKB/TrEMBL;Acc:Q8GUP4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.