Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78396 | Canola | endoplasmic reticulum, golgi | 84.83 | 87.79 |
| AT5G10710.1 | Thale cress | cytosol | 68.54 | 78.21 |
| VIT_04s0008g02440.t01 | Wine grape | nucleus | 57.3 | 62.58 |
| PGSC0003DMT400004637 | Potato | cytosol | 56.18 | 62.11 |
| Solyc08g077520.2.1 | Tomato | cytosol, nucleus | 55.34 | 61.18 |
| HORVU6Hr1G002620.4 | Barley | cytosol | 33.15 | 59.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 27.25 | 57.74 |
| KRH52593 | Soybean | nucleus | 56.46 | 57.1 |
| KRH61930 | Soybean | nucleus | 57.02 | 57.02 |
| KXG38548 | Sorghum | cytosol | 49.44 | 55.52 |
| TraesCS6A01G013400.1 | Wheat | cytosol | 50.0 | 52.51 |
| TraesCS6B01G020300.2 | Wheat | nucleus | 49.72 | 52.06 |
| TraesCS6D01G016500.1 | Wheat | cytosol | 49.16 | 51.62 |
| HORVU6Hr1G002520.13 | Barley | cytosol, nucleus | 49.44 | 51.16 |
| TraesCS3D01G493500.1 | Wheat | cytosol, extracellular, plastid | 16.01 | 47.9 |
| Zm00001d032978_P001 | Maize | cytosol | 20.51 | 47.1 |
| Os04t0284100-01 | Rice | cytosol | 13.48 | 44.44 |
| GSMUA_AchrUn_... | Banana | cytosol | 18.26 | 43.05 |
Protein Annotations
| EnsemblPlants:CDX70366 | EnsemblPlantsGene:GSBRNA2T00140152001 | GO:A0A078C072 | GO:GO:0000776 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0034508 | InterPro:CENP-O |
| PANTHER:PTHR14582 | PFAM:PF09496 | ProteinID:CDX70366 | ProteinID:CDX70366.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0004EDDAAF | MapMan:35.2 | : | : | : | : |
Description
BnaC03g04500D
Coordinates
chrLK031791:+:48491..51815
Molecular Weight (calculated)
40845.4 Da
IEP (calculated)
5.649
GRAVY (calculated)
-0.182
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MKREDSFHLC TGISVSNFGI CVELGLVIMG LFFGLGQLGA LWKAKMGEMI VSLDEDIPLD STRARFTNLL KRHQQLTDRL TRDSDKMIFD RLSKEFEAAR
101: ASQNQEVCLD GEEWNDGLLA TLRERVHMEA DKKESGNSGF APVSHLEERI AYRVGNKVIY CLEGARIGIQ YETSFAGETY EIYHCVLESK SFLEKMNVLE
201: HTIPFFLPLR DLENDLLSSN AKKFIDNVGD LLHAYVERRE QVRLIKELYG NQIRELYHSL PYHMIEFAID DCDCKVVVSL RYGNLMCELP TKVRVLAWPM
301: HQLKRQCTSP RLSKLASQAI PVRLSFAEDA LRIQSLPEAY AEIVVNMPQE IEQIFL
101: ASQNQEVCLD GEEWNDGLLA TLRERVHMEA DKKESGNSGF APVSHLEERI AYRVGNKVIY CLEGARIGIQ YETSFAGETY EIYHCVLESK SFLEKMNVLE
201: HTIPFFLPLR DLENDLLSSN AKKFIDNVGD LLHAYVERRE QVRLIKELYG NQIRELYHSL PYHMIEFAID DCDCKVVVSL RYGNLMCELP TKVRVLAWPM
301: HQLKRQCTSP RLSKLASQAI PVRLSFAEDA LRIQSLPEAY AEIVVNMPQE IEQIFL
001: MGEMIVSMDQ DIRLDTTRAR LSNLLKRHRE LSDRLTRDSD KTMLDRLNKE FEAARRSQSQ EVFLDGEEWN DGLLATLRER VHMEADRKAD NGNAGFSLVC
101: HPEERITYRV GNKVICCLDG SRIGIQFETS TAGETYEVYH CVLESKSFLE KMIVLEHTIP FFLPLSDLEN DLLFSNAKKF IDNVGDLLQA YVDRKEQVRL
201: IKELFGHQIS EIYHSLPYHM IEFSMDDCDC KFVVSLRYGD LLCELPTKVR ILVWPMHHLS KKQCTSPGSP AIPVRLPFAE DAFRIQSLPE AYAEIMPNMP
301: NEIRQLFQTS PS
101: HPEERITYRV GNKVICCLDG SRIGIQFETS TAGETYEVYH CVLESKSFLE KMIVLEHTIP FFLPLSDLEN DLLFSNAKKF IDNVGDLLQA YVDRKEQVRL
201: IKELFGHQIS EIYHSLPYHM IEFSMDDCDC KFVVSLRYGD LLCELPTKVR ILVWPMHHLS KKQCTSPGSP AIPVRLPFAE DAFRIQSLPE AYAEIMPNMP
301: NEIRQLFQTS PS
Arabidopsis Description
Centromere protein O [Source:UniProtKB/TrEMBL;Acc:Q8GUP4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.