Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006073.1-P | Field mustard | endoplasmic reticulum | 93.02 | 87.91 |
| CDX70366 | Canola | endoplasmic reticulum, extracellular, golgi | 87.79 | 84.83 |
| AT5G10710.1 | Thale cress | cytosol | 70.06 | 77.24 |
| VIT_04s0008g02440.t01 | Wine grape | nucleus | 58.72 | 61.96 |
| PGSC0003DMT400004637 | Potato | cytosol | 56.98 | 60.87 |
| Solyc08g077520.2.1 | Tomato | cytosol, nucleus | 56.1 | 59.94 |
| HORVU6Hr1G002620.4 | Barley | cytosol | 34.3 | 59.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 28.2 | 57.74 |
| KRH52593 | Soybean | nucleus | 57.56 | 56.25 |
| KRH61930 | Soybean | nucleus | 58.14 | 56.18 |
| KXG38548 | Sorghum | cytosol | 51.74 | 56.15 |
| TraesCS6A01G013400.1 | Wheat | cytosol | 51.16 | 51.92 |
| TraesCS6B01G020300.2 | Wheat | nucleus | 50.87 | 51.47 |
| HORVU6Hr1G002520.13 | Barley | cytosol, nucleus | 51.16 | 51.16 |
| TraesCS6D01G016500.1 | Wheat | cytosol | 50.29 | 51.03 |
| Zm00001d032978_P001 | Maize | cytosol | 21.8 | 48.39 |
| TraesCS3D01G493500.1 | Wheat | cytosol, extracellular, plastid | 16.57 | 47.9 |
| Os04t0284100-01 | Rice | cytosol | 13.66 | 43.52 |
| GSMUA_AchrUn_... | Banana | cytosol | 18.9 | 43.05 |
Protein Annotations
| EnsemblPlants:CDX78396 | EnsemblPlantsGene:GSBRNA2T00129772001 | GO:A0A078CMI3 | GO:GO:0000776 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0034508 | InterPro:CENP-O |
| PANTHER:PTHR14582 | PFAM:PF09496 | ProteinID:CDX78396 | ProteinID:CDX78396.1 | TMHMM:TMhelix | UniParc:UPI0004EF0FDC |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA03g03080D
Coordinates
chrLK031815:+:584631..587677
Molecular Weight (calculated)
39683.8 Da
IEP (calculated)
5.835
GRAVY (calculated)
-0.234
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MKREGSFHLC IDFGICVELG LVIVGLFIRK TWNFRSDIVS LDDDIPLDST RARFSNLLKR HQQLTDRLTR DSDKMIFDRL SKEFEAARAS QSQEVCLDGE
101: EWNDGLLATL RERVHMEADK KDSGSSGFAP VSHPEERVAY RVGNKVIYCL EGARIGIQYE TSFAGETYEI YHCVLESKSF LEKMNVLEHT IPFFLPLRDL
201: ENDLLSSNAK KFIDNVGDLL HAYVERREQV RLIKELYGNQ IRELYHSLPY HMIEFAIDDC DCKVVVSLRY GNLMCELPTK VRVLAWPMHQ LKRQCTSPRL
301: SKLASQAIPV RLSFAEDALR IQSLPEAYAE IVVNMPQEIE QIFL
101: EWNDGLLATL RERVHMEADK KDSGSSGFAP VSHPEERVAY RVGNKVIYCL EGARIGIQYE TSFAGETYEI YHCVLESKSF LEKMNVLEHT IPFFLPLRDL
201: ENDLLSSNAK KFIDNVGDLL HAYVERREQV RLIKELYGNQ IRELYHSLPY HMIEFAIDDC DCKVVVSLRY GNLMCELPTK VRVLAWPMHQ LKRQCTSPRL
301: SKLASQAIPV RLSFAEDALR IQSLPEAYAE IVVNMPQEIE QIFL
001: MGEMIVSMDQ DIRLDTTRAR LSNLLKRHRE LSDRLTRDSD KTMLDRLNKE FEAARRSQSQ EVFLDGEEWN DGLLATLRER VHMEADRKAD NGNAGFSLVC
101: HPEERITYRV GNKVICCLDG SRIGIQFETS TAGETYEVYH CVLESKSFLE KMIVLEHTIP FFLPLSDLEN DLLFSNAKKF IDNVGDLLQA YVDRKEQVRL
201: IKELFGHQIS EIYHSLPYHM IEFSMDDCDC KFVVSLRYGD LLCELPTKVR ILVWPMHHLS KKQCTSPGSP AIPVRLPFAE DAFRIQSLPE AYAEIMPNMP
301: NEIRQLFQTS PS
101: HPEERITYRV GNKVICCLDG SRIGIQFETS TAGETYEVYH CVLESKSFLE KMIVLEHTIP FFLPLSDLEN DLLFSNAKKF IDNVGDLLQA YVDRKEQVRL
201: IKELFGHQIS EIYHSLPYHM IEFSMDDCDC KFVVSLRYGD LLCELPTKVR ILVWPMHHLS KKQCTSPGSP AIPVRLPFAE DAFRIQSLPE AYAEIMPNMP
301: NEIRQLFQTS PS
Arabidopsis Description
Centromere protein O [Source:UniProtKB/TrEMBL;Acc:Q8GUP4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.