CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG36990
OQU90613

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10710.1	KXG36990	AT1G09270.1	21798944
AT5G10710.1	OQU90613	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G002620.4	Barley	cytosol	53.94	85.5
Zm00001d032978_P001	Maize	cytosol	38.49	78.71
TraesCS3D01G493500.1	Wheat	cytosol, extracellular, plastid	29.02	77.31
TraesCS6A01G013400.1	Wheat	cytosol	82.02	76.7
TraesCS6B01G020300.2	Wheat	nucleus	81.7	76.18
HORVU6Hr1G002520.13	Barley	cytosol, nucleus	82.65	76.16
TraesCS6D01G016500.1	Wheat	cytosol	81.07	75.81
GSMUA_AchrUn_...	Banana	cytosol	34.38	64.88
VIT_04s0008g02440.t01	Wine grape	nucleus	64.67	62.88
Os04t0284100-01	Rice	cytosol	21.14	62.04
PGSC0003DMT400004637	Potato	cytosol	62.15	61.18
Solyc08g077520.2.1	Tomato	cytosol, nucleus	61.2	60.25
KRH61930	Soybean	nucleus	62.15	55.34
KRH52593	Soybean	nucleus	60.88	54.83
GSMUA_AchrUn_...	Banana	cytosol	25.24	52.98
AT5G10710.1	Thale cress	cytosol	51.73	52.56
CDX78396	Canola	endoplasmic reticulum, golgi	56.15	51.74
CDX70366	Canola	endoplasmic reticulum, extracellular, golgi	55.52	49.44
Bra006073.1-P	Field mustard	endoplasmic reticulum	55.2	48.08

Protein Annotations

EnsemblPlants:KXG38548	EnsemblPlantsGene:SORBI_3001G250700	GO:GO:0000776	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0034508	InterPro:CENP-O	ncoils:Coil
PANTHER:PTHR14582	PFAM:PF09496	ProteinID:KXG38548	ProteinID:KXG38548.1	SEG:seg	UniParc:UPI00081AD1E1
UniProt:A0A1B6QKU6	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:27081589..27088684

Molecular Weight (calculated)

36646.7 Da

IEP (calculated)

5.087

GRAVY (calculated)

-0.323

Length

317 amino acids

Sequence
(BLAST)

001: MAPTETYARD DDAKLEATRA RLSNILRRHE DLKERLSRDS DKLIFERLQK EFEAARAAQT EEISIDDDEW NDGLLATIRE KVHMEADRKA MANQVNVPAD
101: LPFQSRTTYR IRNKVIYCLD GARIGIQYET FFAGEPCEIF HCVLESKSFL EKMIVIEHTL PFFLPIRELE SDLLSSNSIK FIDHLEEILQ AYIDRREQVR
201: LIKELYGNQI GELFHSLPYN MIEFVLEDFE CKVTISIRYS DLLQTLPSQA RVLAWPLRSA KRISTRSSSA SAAQPVPFHL SYAEEALKTL CLPEAYADIV
301: LELPHALKRI FSSRDSD

Best Arabidopsis Sequence Match ( AT5G10710.1 )
(BLAST)

001: MGEMIVSMDQ DIRLDTTRAR LSNLLKRHRE LSDRLTRDSD KTMLDRLNKE FEAARRSQSQ EVFLDGEEWN DGLLATLRER VHMEADRKAD NGNAGFSLVC
101: HPEERITYRV GNKVICCLDG SRIGIQFETS TAGETYEVYH CVLESKSFLE KMIVLEHTIP FFLPLSDLEN DLLFSNAKKF IDNVGDLLQA YVDRKEQVRL
201: IKELFGHQIS EIYHSLPYHM IEFSMDDCDC KFVVSLRYGD LLCELPTKVR ILVWPMHHLS KKQCTSPGSP AIPVRLPFAE DAFRIQSLPE AYAEIMPNMP
301: NEIRQLFQTS PS

Arabidopsis Description

Centromere protein O [Source:UniProtKB/TrEMBL;Acc:Q8GUP4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.