Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d012851_P001 | Maize | cytosol | 94.25 | 95.4 |
| Zm00001d034842_P001 | Maize | cytosol | 93.32 | 87.8 |
| HORVU5Hr1G121540.1 | Barley | cytosol | 84.63 | 85.66 |
| TraesCS5B01G549700.1 | Wheat | cytosol | 86.63 | 84.82 |
| TraesCS5D01G536700.1 | Wheat | cytosol | 86.36 | 84.56 |
| TraesCS4A01G335400.1 | Wheat | cytosol | 86.1 | 83.96 |
| Os03t0849600-01 | Rice | cytosol | 84.49 | 83.82 |
| GSMUA_AchrUn_... | Banana | cytosol | 66.31 | 66.13 |
| Solyc08g006660.1.1 | Tomato | plastid | 58.96 | 59.43 |
| PGSC0003DMT400067640 | Potato | cytosol, plastid | 58.82 | 59.3 |
| VIT_17s0000g01560.t01 | Wine grape | cytosol | 59.49 | 59.25 |
| KRH03947 | Soybean | cytosol | 59.22 | 58.68 |
| AT4G24840.1 | Thale cress | cytosol, plastid | 58.82 | 58.2 |
| Bra013840.1-P | Field mustard | mitochondrion | 50.8 | 58.02 |
| KRH57220 | Soybean | cytosol | 57.75 | 57.22 |
| CDX92658 | Canola | plastid | 57.49 | 56.8 |
| CDY34317 | Canola | cytosol, plastid | 57.49 | 56.73 |
| CDY11039 | Canola | cytosol | 57.35 | 56.67 |
| CDY03412 | Canola | plastid | 57.35 | 56.45 |
| CDX70811 | Canola | plastid | 52.14 | 53.79 |
| CDY51233 | Canola | cytosol, plastid | 51.6 | 53.31 |
| Bra006453.1-P | Field mustard | cytosol, plastid | 51.47 | 53.18 |
| Bra019205.1-P | Field mustard | cytosol | 57.49 | 50.47 |
Protein Annotations
| MapMan:22.6.2.2 | EntrezGene:8061643 | UniProt:C5WSX1 | InterPro:COG2 | InterPro:COG_complex_COG2_C | InterPro:COG_su2_N |
| ncoils:Coil | ProteinID:EER90517.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006891 |
| GO:GO:0007030 | GO:GO:0008150 | GO:GO:0008565 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0017119 | EnsemblPlants:OQU90613 | ProteinID:OQU90613 | ProteinID:OQU90613.1 | PFAM:PF06148 |
| PFAM:PF12022 | PANTHER:PTHR12961 | EnsemblPlantsGene:SORBI_3001G012900 | unigene:Sbi.9513 | UniParc:UPI0001A824E3 | RefSeq:XP_002463519.1 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:1211147..1220640
Molecular Weight (calculated)
82441.6 Da
IEP (calculated)
6.071
GRAVY (calculated)
-0.135
Length
748 amino acids
Sequence
(BLAST)
(BLAST)
001: MADLAAAAAA PPPATDLFGE PIEAHPPWFK PDAFLRAGFD PDAYVAELRS YVPLESLAAE LRAHLAALRA ELVGLINRDY ADFVGLSARL KGVDAAAARM
101: RAPLADLRDK VAAFRAGASA ALAALRAGLE QRAAATAARE LLELLLDTSH VVSKVEKLIK ELPTAPSDSS NAEVPNNDTG MPNGEAGTGV RETQSILLER
201: IASEMNRLKF YISHAQNIPF IENIEKRVQG ATKLLDGSLE RCFVDGLEHR DAKVIYNCLR AYAAIDNTSS AEELFRTTVV SPLIQKIVPQ NYARAVAGAS
301: SDELEDDYQQ IKECVKKDCK FILEISSSEN SGLHVFDFLG NSILKEVLSA IQKGKPGAFS PGKPKEFLRN YKASLGFLDF LEGYCLSKSA VTKFRAEPAY
401: TDFMRQWNVG VYFSLRFQEI AGGLDSTLTN TFSPTGSNEA QGKQLLLKQS IKLLESLESC WSDEVLLFSH CDKFLRLSLQ LISRYTTWLS SGLSARKASD
501: GSPNSPADAE WALSTPIEDF IYIMHDVHAV IGELSESGSF IGHVNQLLGS CPIEVLNLVK QSILQAVEPL KEVLPAIMNV MIGIIVKKSN EDLKHLKGIT
601: ATYRMTNKLP VRHSPYVSGI LHPLKVFLEG ERIHYLSEDD KTRLCRGSTD KITAIYYDLV SEVVTVARKT ESSLQRLRQG AQRRVGASTD ASDNIISDTD
701: KICMQLFLDI QEYARNLRAI GIDAREIDSY RALWQCVAPK DKQENIQF
101: RAPLADLRDK VAAFRAGASA ALAALRAGLE QRAAATAARE LLELLLDTSH VVSKVEKLIK ELPTAPSDSS NAEVPNNDTG MPNGEAGTGV RETQSILLER
201: IASEMNRLKF YISHAQNIPF IENIEKRVQG ATKLLDGSLE RCFVDGLEHR DAKVIYNCLR AYAAIDNTSS AEELFRTTVV SPLIQKIVPQ NYARAVAGAS
301: SDELEDDYQQ IKECVKKDCK FILEISSSEN SGLHVFDFLG NSILKEVLSA IQKGKPGAFS PGKPKEFLRN YKASLGFLDF LEGYCLSKSA VTKFRAEPAY
401: TDFMRQWNVG VYFSLRFQEI AGGLDSTLTN TFSPTGSNEA QGKQLLLKQS IKLLESLESC WSDEVLLFSH CDKFLRLSLQ LISRYTTWLS SGLSARKASD
501: GSPNSPADAE WALSTPIEDF IYIMHDVHAV IGELSESGSF IGHVNQLLGS CPIEVLNLVK QSILQAVEPL KEVLPAIMNV MIGIIVKKSN EDLKHLKGIT
601: ATYRMTNKLP VRHSPYVSGI LHPLKVFLEG ERIHYLSEDD KTRLCRGSTD KITAIYYDLV SEVVTVARKT ESSLQRLRQG AQRRVGASTD ASDNIISDTD
701: KICMQLFLDI QEYARNLRAI GIDAREIDSY RALWQCVAPK DKQENIQF
001: MSDLVATSPS PSSAPRSATD FFSDPYDSHP LWFKPSLFLS PNFDSESYIS ELRTFVPFDT LRSELRSHLA SLNRELVDLI NRDYADFVNL STKLVDIDAA
101: VVRMRAPLLE LREKITGFRG SVEAALFALR NGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSTP SDWQNEDANS MGRSSMNDEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFI ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTNAA EEIFRTTIVA PFIQKIITHE
301: TTTNAAGTSE DELENDYKQI KHFIAKDCKM LLEISSTDKS GLHVFDFLAN SILKEVLWAI QKVKPGAFSP GRPTEFLKNY KASLDFLAYL EGYCPSRSAV
401: TKFRAEAICV EFMKQWNVGV YFSLRFQEIA GALDSALTSP SLVFIQDSDK ESSLNLILRQ SDTLLECLRS CWKEDVLVFS AADKFLRLTL QLLSRYSFWV
501: SSALNNRKSN ASPSPGCEWA VSATAEDFVY VIHDVNCLVS EVCGDYLGHI SQYLSSSSTE VLDVVRISIE QGGVSLEKVL PLLTKTIIDV IVDKSVEDLR
601: QLRGITATFR MTNKPLPVRH SPYVVGLLRP VKAFLEGDKA RNYLTQKTKE ELLHGSVSEI TRRYYELAAD VVSVARKTQS SLQKLRQNAQ RRGGAASGVS
701: DQNVSETDKM CMQLFLDIQE YGRNVSALGL KPADIPEYCS FWQCVAPADR QNSISV
101: VVRMRAPLLE LREKITGFRG SVEAALFALR NGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSTP SDWQNEDANS MGRSSMNDEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFI ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTNAA EEIFRTTIVA PFIQKIITHE
301: TTTNAAGTSE DELENDYKQI KHFIAKDCKM LLEISSTDKS GLHVFDFLAN SILKEVLWAI QKVKPGAFSP GRPTEFLKNY KASLDFLAYL EGYCPSRSAV
401: TKFRAEAICV EFMKQWNVGV YFSLRFQEIA GALDSALTSP SLVFIQDSDK ESSLNLILRQ SDTLLECLRS CWKEDVLVFS AADKFLRLTL QLLSRYSFWV
501: SSALNNRKSN ASPSPGCEWA VSATAEDFVY VIHDVNCLVS EVCGDYLGHI SQYLSSSSTE VLDVVRISIE QGGVSLEKVL PLLTKTIIDV IVDKSVEDLR
601: QLRGITATFR MTNKPLPVRH SPYVVGLLRP VKAFLEGDKA RNYLTQKTKE ELLHGSVSEI TRRYYELAAD VVSVARKTQS SLQKLRQNAQ RRGGAASGVS
701: DQNVSETDKM CMQLFLDIQE YGRNVSALGL KPADIPEYCS FWQCVAPADR QNSISV
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterP /.../009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G24840]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.