Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11039 | Canola | cytosol | 87.32 | 98.28 |
| Bra013840.1-P | Field mustard | mitochondrion | 69.01 | 89.77 |
| AT4G24840.1 | Thale cress | cytosol, plastid | 76.53 | 86.24 |
| Bra006453.1-P | Field mustard | cytosol, plastid | 64.44 | 75.83 |
| KRH03947 | Soybean | cytosol | 60.8 | 68.61 |
| VIT_17s0000g01560.t01 | Wine grape | cytosol | 59.86 | 67.91 |
| KRH57220 | Soybean | cytosol | 59.51 | 67.15 |
| PGSC0003DMT400067640 | Potato | cytosol, plastid | 56.81 | 65.23 |
| Solyc08g006660.1.1 | Tomato | plastid | 56.57 | 64.96 |
| GSMUA_AchrUn_... | Banana | cytosol | 53.29 | 60.53 |
| Zm00001d012851_P001 | Maize | cytosol | 49.88 | 57.51 |
| OQU90613 | Sorghum | cytosol | 50.47 | 57.49 |
| Os03t0849600-01 | Rice | cytosol | 49.65 | 56.1 |
| HORVU5Hr1G121540.1 | Barley | cytosol | 47.65 | 54.94 |
| TraesCS5B01G549700.1 | Wheat | cytosol | 48.83 | 54.45 |
| TraesCS5D01G536700.1 | Wheat | cytosol | 48.83 | 54.45 |
| TraesCS4A01G335400.1 | Wheat | cytosol | 48.94 | 54.37 |
| Zm00001d034842_P001 | Maize | cytosol | 50.12 | 53.71 |
Protein Annotations
| EnsemblPlants:Bra019205.1 | EnsemblPlants:Bra019205.1-P | EnsemblPlantsGene:Bra019205 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0007030 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 | InterPro:COG2 |
| InterPro:COG_complex_COG2_C | InterPro:COG_su2_N | ncoils:Coil | PANTHER:PTHR12961 | PFAM:PF06148 | PFAM:PF12022 |
| SEG:seg | UniParc:UPI0002541048 | UniProt:M4DRR2 | MapMan:22.6.2.2 | : | : |
Description
AT4G24840 (E=0.0) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterPro:IPR009316); Has 214 Blast hits to 204 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 56; Plants - 22; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Coordinates
chrA03:-:25709399..25714819
Molecular Weight (calculated)
95026.2 Da
IEP (calculated)
5.709
GRAVY (calculated)
-0.118
Length
852 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMFQIDVDV LASAAATAAA SMRIVVVRFA DADADADAYY IATADFIGVR RSFLRQRNEQ ELTQNVDTAA AAGTCGNQTN SPYDICGFPH CIESKMSDLV
101: APLPSPSSAP RSASDFFSDP YDSHPLWFKP SLFLSPDFDS ESYISELRTF VPFDTLRSEI RSHLASLNRE LVDLINRDYA DFVSLSTKLV DIDEAVVRMR
201: APLLGIREKI AAFRGSVEAA LFALRSGLQQ RSDAAAAREV LELLLDTFHV VSKVEKLIKV LPSAPSDWKN EDGVSLGRSA VNVENATQQD GNTMRETQSM
301: LLERIASEMN RLKFYMAHAQ NLPFVENMEK RIQSASVLLD ASLGHCFIDG LNNSDTSVLY NCLRAYAAID NTTNAEEIFR TTIVAPFIHK TIAHERSADA
401: TGSSDELEND YKLIKHFIAK DCKMLIEISS TEKSGLHVFN FLANSILKEV LSAIQKVKPG AFSPGRPTEF LKNYKASLDF LAYLEGYCPS RSAVTKFRTE
501: AVCIEFMKQW NVGVYFSLRF QEIAGALDSA LTSSSLVFIQ DSDLDKQSFP NLMLRQSATL LESLRSCWKE DVLVFSAADK FLRLTLQLLS RYCIWVSSAL
601: HTRKGNASPS PGCDWAVSAS AEDFVYVIHD VNYLVSEVCG DYLKHISQYI SSCSTEVRDV VRMSILQGGD KLKEVLPLLT NTIIEIIVDK SVEDLRQVKG
701: ITATYRLTNK PPPVRHSPYV VGILRHVKAF LEGEKATRYL TQATREELLL RTVTEITRRY YELADEVVSV ARRTESSLQQ FRRKAQKRAG AASGVSDDNV
801: SETDKMCMQL FLDTQEYGRN ISALGLKPAE IPVYCSLWQC VAPADRQNTI SV
101: APLPSPSSAP RSASDFFSDP YDSHPLWFKP SLFLSPDFDS ESYISELRTF VPFDTLRSEI RSHLASLNRE LVDLINRDYA DFVSLSTKLV DIDEAVVRMR
201: APLLGIREKI AAFRGSVEAA LFALRSGLQQ RSDAAAAREV LELLLDTFHV VSKVEKLIKV LPSAPSDWKN EDGVSLGRSA VNVENATQQD GNTMRETQSM
301: LLERIASEMN RLKFYMAHAQ NLPFVENMEK RIQSASVLLD ASLGHCFIDG LNNSDTSVLY NCLRAYAAID NTTNAEEIFR TTIVAPFIHK TIAHERSADA
401: TGSSDELEND YKLIKHFIAK DCKMLIEISS TEKSGLHVFN FLANSILKEV LSAIQKVKPG AFSPGRPTEF LKNYKASLDF LAYLEGYCPS RSAVTKFRTE
501: AVCIEFMKQW NVGVYFSLRF QEIAGALDSA LTSSSLVFIQ DSDLDKQSFP NLMLRQSATL LESLRSCWKE DVLVFSAADK FLRLTLQLLS RYCIWVSSAL
601: HTRKGNASPS PGCDWAVSAS AEDFVYVIHD VNYLVSEVCG DYLKHISQYI SSCSTEVRDV VRMSILQGGD KLKEVLPLLT NTIIEIIVDK SVEDLRQVKG
701: ITATYRLTNK PPPVRHSPYV VGILRHVKAF LEGEKATRYL TQATREELLL RTVTEITRRY YELADEVVSV ARRTESSLQQ FRRKAQKRAG AASGVSDDNV
801: SETDKMCMQL FLDTQEYGRN ISALGLKPAE IPVYCSLWQC VAPADRQNTI SV
001: MSDLVATSPS PSSAPRSATD FFSDPYDSHP LWFKPSLFLS PNFDSESYIS ELRTFVPFDT LRSELRSHLA SLNRELVDLI NRDYADFVNL STKLVDIDAA
101: VVRMRAPLLE LREKITGFRG SVEAALFALR NGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSTP SDWQNEDANS MGRSSMNDEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFI ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTNAA EEIFRTTIVA PFIQKIITHE
301: TTTNAAGTSE DELENDYKQI KHFIAKDCKM LLEISSTDKS GLHVFDFLAN SILKEVLWAI QKVKPGAFSP GRPTEFLKNY KASLDFLAYL EGYCPSRSAV
401: TKFRAEAICV EFMKQWNVGV YFSLRFQEIA GALDSALTSP SLVFIQDSDK ESSLNLILRQ SDTLLECLRS CWKEDVLVFS AADKFLRLTL QLLSRYSFWV
501: SSALNNRKSN ASPSPGCEWA VSATAEDFVY VIHDVNCLVS EVCGDYLGHI SQYLSSSSTE VLDVVRISIE QGGVSLEKVL PLLTKTIIDV IVDKSVEDLR
601: QLRGITATFR MTNKPLPVRH SPYVVGLLRP VKAFLEGDKA RNYLTQKTKE ELLHGSVSEI TRRYYELAAD VVSVARKTQS SLQKLRQNAQ RRGGAASGVS
701: DQNVSETDKM CMQLFLDIQE YGRNVSALGL KPADIPEYCS FWQCVAPADR QNSISV
101: VVRMRAPLLE LREKITGFRG SVEAALFALR NGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSTP SDWQNEDANS MGRSSMNDEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFI ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTNAA EEIFRTTIVA PFIQKIITHE
301: TTTNAAGTSE DELENDYKQI KHFIAKDCKM LLEISSTDKS GLHVFDFLAN SILKEVLWAI QKVKPGAFSP GRPTEFLKNY KASLDFLAYL EGYCPSRSAV
401: TKFRAEAICV EFMKQWNVGV YFSLRFQEIA GALDSALTSP SLVFIQDSDK ESSLNLILRQ SDTLLECLRS CWKEDVLVFS AADKFLRLTL QLLSRYSFWV
501: SSALNNRKSN ASPSPGCEWA VSATAEDFVY VIHDVNCLVS EVCGDYLGHI SQYLSSSSTE VLDVVRISIE QGGVSLEKVL PLLTKTIIDV IVDKSVEDLR
601: QLRGITATFR MTNKPLPVRH SPYVVGLLRP VKAFLEGDKA RNYLTQKTKE ELLHGSVSEI TRRYYELAAD VVSVARKTQS SLQKLRQNAQ RRGGAASGVS
701: DQNVSETDKM CMQLFLDIQE YGRNVSALGL KPADIPEYCS FWQCVAPADR QNSISV
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterP /.../009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G24840]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.