Factsheet for Bra020657.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 4
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001412.1-P
Bra006136.1-P
Bra023354.1-P
Bra026236.1-P
Bra029188.1-P
Bra034254.1-P
Bra034827.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G49210.1	Bra034254.1-P	AT2G25490.1	21798944
AT5G49210.1	Bra001412.1-P	AT3G11590.1	21798944
AT5G49210.1	Bra034827.1-P	AT3G11590.1	21798944
AT5G49210.1	Bra026236.1-P	AT4G17220.1	21798944
AT5G49210.1	Bra006136.1-P	AT5G11980.1	21798944
AT5G49210.1	Bra023354.1-P	AT5G11980.1	21798944
AT5G49210.1	Bra029188.1-P	AT5G51110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33924	Canola	mitochondrion, nucleus	99.49	99.49
Bra037430.1-P	Field mustard	mitochondrion	84.26	86.01
AT5G49210.1	Thale cress	mitochondrion	75.63	76.41
Solyc05g053730.2.1	Tomato	nucleus	50.76	50.0
PGSC0003DMT400040750	Potato	mitochondrion	50.25	49.5
KRH01771	Soybean	mitochondrion	43.15	48.57
KRH46915	Soybean	mitochondrion	43.15	47.75
VIT_05s0029g01220.t01	Wine grape	mitochondrion	45.69	45.92
Zm00001d004927_P001	Maize	mitochondrion	39.09	41.4
Os11t0148600-01	Rice	mitochondrion	39.09	41.4
OQU82869	Sorghum	mitochondrion	37.56	40.66
TraesCS4B01G134100.1	Wheat	mitochondrion	39.09	40.31
TraesCS4A01G184600.1	Wheat	mitochondrion	38.58	39.79
TraesCS4D01G129000.1	Wheat	mitochondrion	38.58	39.79
GSMUA_Achr1P11210_001	Banana	mitochondrion	39.09	36.15
HORVU4Hr1G025670.1	Barley	mitochondrion	39.09	35.65
Os12t0146400-01	Rice	mitochondrion	16.75	31.13
KXG38100	Sorghum	plastid	26.9	23.14

Protein Annotations

EnsemblPlants:Bra020657.1	EnsemblPlants:Bra020657.1-P	EnsemblPlantsGene:Bra020657	ncoils:Coil	PANTHER:PTHR36402	SEG:seg
UniParc:UPI0002546509	UniProt:M4DVW3	MapMan:35.2	:	:	:

Description

AT5G49210 (E=9e-057) | unknown protein

Coordinates

chrA02:+:23893020..23894153

Molecular Weight (calculated)

23780.4 Da

IEP (calculated)

10.081

GRAVY (calculated)

-1.133

Length

197 amino acids

Sequence
(BLAST)

001: MSFCNKLSRV VRHQSETASS MITSLRSFSS EAATHHRYHQ ETHSFLEPER YINSWEPAKD PRDAERMLAQ LRRDYAKKVS LYRKDYVHEI EMLRVEKQRK
101: DEARLVAERA ANEERRRLKA EAAKVRAEER KVFEEEFRRT LMKEREEKLE FWRMTGLKRE DKKKDKKKLL HEQSSLWIEP KELEKKITEA LVESTTL

Best Arabidopsis Sequence Match ( AT5G49210.1 )
(BLAST)

001: MAFCNKLSRF VRRQSENASM IGSLRSFSAD ATHHRFHQET HNFLEPEYYI GSWEAPSDPK DAERKLAQLR RDYAKKVRVY RKEYIHEIEM LRVEKQRKDE
101: ARLLAERAAN EERRLLKAEA AKVRAEERKI ADEEFRQTLI KERAEKLEMW KMMGQKREEK IKEREKLLRE QSSLWIEQKE LERKITEALV DNVVL

Arabidopsis Description

AT5g49210/K21P3_8 [Source:UniProtKB/TrEMBL;Acc:Q945P2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.