CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90022
EER92716
EER93165
EER95273
EES06473
EES07849
EES11990
KXG22761
KXG30263

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G49210.1	EER90022	AT2G25490.1	21798944
AT5G49210.1	EES06473	AT2G25490.1	21798944
AT5G49210.1	EES07849	AT3G08530.1	21798944
AT5G49210.1	KXG22761	AT3G08530.1	21798944
AT5G49210.1	EES11990	AT3G11590.1	21798944
AT5G49210.1	KXG30263	AT3G11590.1	21798944
AT5G49210.1	EER95273	AT4G17220.1	21798944
AT5G49210.1	EER92716	AT5G11980.1	21798944
AT5G49210.1	EER93165	AT5G51110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82869	Sorghum	mitochondrion	48.47	60.99
Zm00001d004927_P001	Maize	mitochondrion	46.72	57.53
Os11t0148600-01	Rice	mitochondrion	44.1	54.3
TraesCS4D01G129000.1	Wheat	mitochondrion	42.79	51.31
TraesCS4B01G134100.1	Wheat	mitochondrion	42.79	51.31
TraesCS4A01G184600.1	Wheat	mitochondrion	42.79	51.31
HORVU4Hr1G025670.1	Barley	mitochondrion	43.67	46.3
Os12t0146400-01	Rice	mitochondrion	18.78	40.57
GSMUA_Achr1P11210_001	Banana	mitochondrion	29.26	31.46
KRH01771	Soybean	mitochondrion	23.14	30.29
KRH46915	Soybean	mitochondrion	23.14	29.78
VIT_05s0029g01220.t01	Wine grape	mitochondrion	24.45	28.57
CDY56435	Canola	mitochondrion	23.14	27.46
PGSC0003DMT400040750	Potato	mitochondrion	23.58	27.0
Solyc05g053730.2.1	Tomato	nucleus	23.58	27.0
CDX86248	Canola	mitochondrion	22.71	26.94
Bra037430.1-P	Field mustard	mitochondrion	22.71	26.94
CDY33924	Canola	mitochondrion, nucleus	23.14	26.9
Bra020657.1-P	Field mustard	mitochondrion, nucleus	23.14	26.9
AT5G49210.1	Thale cress	mitochondrion	22.27	26.15
CDY70877	Canola	mitochondrion	23.58	23.89

Protein Annotations

EnsemblPlants:KXG38100	EnsemblPlantsGene:SORBI_3001G180500	ncoils:Coil	PANTHER:PTHR36402	ProteinID:KXG38100	ProteinID:KXG38100.1
SEG:seg	UniParc:UPI00081ADC7B	UniProt:A0A1B6QJK5	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr1:+:15303691..15304827

Molecular Weight (calculated)

25799.5 Da

IEP (calculated)

11.610

GRAVY (calculated)

-0.762

Length

229 amino acids

Sequence
(BLAST)

001: MSYFSSRFAP SPYPFVHGYS RETITGIREG TTPPPRTRPS QAAAPSICSR PPALPPPSAQ ATSSAAAMAL SSSRSHHLLR LLFRGFHASA RTLARAEPHE
101: FSKPSRYLGS WEPVAEPQEA WGRLDRLCKW YVRDVQLRRQ YAYEVQLMEA ERQRKAEATR IANQERKAAK LAAAQTRAAE RRAFEDFRQT LIGFDPSWRG
201: RRRQRRWPGA DRRGGAGGLA RALSPPECP

Best Arabidopsis Sequence Match ( AT5G49210.3 )
(BLAST)

001: MAFCNKLSRF VRRQSENASM IGSLRSFSAD ATHHRFHQET HNFLEPEYYI GSWEAPSDPK DAERKLAQLR RDYAKKVRVY RKEYIHEIEM LRVEKQRKDE
101: ARLLAERAAN EERRLLKAEA AKVRAEERKI ADEEFRQTLL

Arabidopsis Description

AT5g49210/K21P3_8 [Source:UniProtKB/TrEMBL;Acc:Q945P2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.