CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88891
EER99130
KXG21417
KXG25581
KXG35759
OQU84405
OQU93303

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51110.1	EER88891	AT2G24550.1	21798944
AT5G51110.1	EER99130	AT2G24550.1	21798944
AT5G51110.1	KXG25581	AT2G24550.1	21798944
AT5G51110.1	OQU93303	AT2G47450.1	21798944
AT5G51110.1	KXG21417	AT3G10970.1	21798944
AT5G51110.1	KXG35759	AT4G02720.1	21798944
AT5G51110.1	OQU84405	AT5G08650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034715_P001	Maize	plastid	86.85	84.86
Os03t0100200-01	Rice	plastid	64.32	67.49
TraesCSU01G129700.1	Wheat	plastid	59.62	59.07
TraesCS5A01G545700.1	Wheat	plastid	58.22	59.05
TraesCS4B01G379500.1	Wheat	plastid	57.28	55.96
VIT_16s0013g00240.t01	Wine grape	plastid	47.89	48.57
GSMUA_Achr2P18260_001	Banana	plastid	48.83	47.93
Bra029188.1-P	Field mustard	plastid	44.13	43.72
CDY38850	Canola	plastid	44.13	43.72
KRH70391	Soybean	plastid	43.19	42.79
CDY32642	Canola	plastid	43.19	42.79
AT5G51110.1	Thale cress	plastid	43.19	41.82
KRH33344	Soybean	plastid	41.78	41.2
PGSC0003DMT400013443	Potato	plastid	38.03	38.39
CDX71689	Canola	cytosol	18.31	37.86
HORVU4Hr1G090300.6	Barley	plastid	30.99	25.78
OQU93010	Sorghum	mitochondrion	7.04	18.29
KXG33050	Sorghum	cytosol	20.19	15.87

Protein Annotations

KEGG:00790+4.2.1.96	MapMan:1.2.1.2.6	Gene3D:3.30.1360.20	EntrezGene:8079700	UniProt:C5WU41	EnsemblPlants:EER93165
ProteinID:EER93165	ProteinID:EER93165.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006729	GO:GO:0006950	GO:GO:0008124
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987	GO:GO:0016043
GO:GO:0071944	GO:GO:0110102	InterPro:IPR036428	ProteinID:OQU90691.1	ProteinID:OQU90692.1	InterPro:PCD_sf
PFAM:PF01329	PANTHER:PTHR12599	PANTHER:PTHR12599:SF8	MetaCyc:PWY-7158	InterPro:Pterin_deHydtase	EnsemblPlantsGene:SORBI_3001G029100
SUPFAM:SSF55248	UniParc:UPI0001A8290D	RefSeq:XP_002466167.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:2265712..2268310

Molecular Weight (calculated)

22834.5 Da

IEP (calculated)

6.266

GRAVY (calculated)

0.007

Length

213 amino acids

Sequence
(BLAST)

001: MALRLSLAPP AAAPATATCR CSSASFLRPH RSRRPRGCVV AMADLLGDLG ARDPFPEEIE SQFGEKVLGN VDTLHQILIP TLSALSLASL PLQPDAEPLS
101: LDDARKLLFK VVGWRLVLSD GDGDEQRPAR LQCVWKVRDE LCGQELIARI NAALDGAGHA PAALVFEAPN QVTAELSTPS AAGDSLTVND YIVAARIDKV
201: KTLDLIPKKR AWA

Best Arabidopsis Sequence Match ( AT5G51110.2 )
(BLAST)

001: MAATSSSPPC NISASSLLLR QPSRSILKDF LGDFGARDPY PEEIASQFGD KVLGCQSTEH KILIPNASVL SLSQLQCSPV SSSQPPLSGD DARTLLHKVL
101: GWSIVDNEAG GLKIRCMWKV RDFGCGVELI NRIHKVAEAS GHYPSLHLES PTQVRAELFT SSIGGLSMND FIMAAKIDDI KTSDLSPRKR AWA

Arabidopsis Description

ATP1Probable pterin-4-alpha-carbinolamine dehydratase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU63]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.