Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G129700.1 | Wheat | plastid | 32.03 | 38.14 |
| TraesCS4B01G379500.1 | Wheat | plastid | 31.25 | 36.7 |
| TraesCS5A01G545700.1 | Wheat | plastid | 29.69 | 36.19 |
| Os03t0100200-01 | Rice | plastid | 25.39 | 32.02 |
| EER93165 | Sorghum | plastid | 25.78 | 30.99 |
| Zm00001d034715_P001 | Maize | plastid | 25.39 | 29.82 |
| VIT_16s0013g00240.t01 | Wine grape | plastid | 21.48 | 26.19 |
| GSMUA_Achr2P18260_001 | Banana | plastid | 21.48 | 25.35 |
| KRH70391 | Soybean | plastid | 19.53 | 23.26 |
| AT5G51110.1 | Thale cress | plastid | 19.53 | 22.73 |
| Bra029188.1-P | Field mustard | plastid | 18.75 | 22.33 |
| CDY38850 | Canola | plastid | 18.75 | 22.33 |
| CDY32642 | Canola | plastid | 18.36 | 21.86 |
| KRH33344 | Soybean | plastid | 17.58 | 20.83 |
| PGSC0003DMT400013443 | Potato | plastid | 16.41 | 19.91 |
| CDX71689 | Canola | cytosol | 5.47 | 13.59 |
| HORVU3Hr1G060040.1 | Barley | mitochondrion | 6.64 | 9.6 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G090300.6 | EnsemblPlantsGene:HORVU4Hr1G090300 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR12599 |
| PANTHER:PTHR12599:SF8 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B469449 | UniProt:A0A287Q4D7 | MapMan:35.2 |
Description
No Description!
Coordinates
chrchr4H:+:644845372..644846321
Molecular Weight (calculated)
28514.0 Da
IEP (calculated)
12.405
GRAVY (calculated)
-0.408
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: LRIIHPSHCT TMALMLSPAA TFFPVAGKPS AAATRSLLFT TSSSKGRGGR GKVVAMADIL GDFGARDPFP EEIASNFGEK TLGNVDTLHR ILIPTLSVLS
101: LSRVPLDAHP APPLPHQGRL RRAQARVRLE GPGPGLRRRA RRQDQQGPRR RRPRPRRAQL RAAQPSQGPA LHPVRRWAER QRLHHRRQDR PDQHQRSSPQ
201: EEGLGMLMTA HAVLFLFLCM HTRTVLFHGN GMEAILSMLV ALPIVFKTMM PSNQIK
101: LSRVPLDAHP APPLPHQGRL RRAQARVRLE GPGPGLRRRA RRQDQQGPRR RRPRPRRAQL RAAQPSQGPA LHPVRRWAER QRLHHRRQDR PDQHQRSSPQ
201: EEGLGMLMTA HAVLFLFLCM HTRTVLFHGN GMEAILSMLV ALPIVFKTMM PSNQIK
001: MAATSSSPPC NISASSLLLR QPSRSILKDF LGDFGARDPY PEEIASQFGD KVLGCQSTEH KILIPNASVL SLSQLQCSPV SSSQPPLSGD DARTLLHKVL
101: GWSIVDNEAG GLKIRCMWKV RDFGCGVELI NRIHKVAEAS GHYPSLHLES PTQVRAELFT SSIGGLSMND FIMAAKIDDI KTSDLSPRKR AWA
101: GWSIVDNEAG GLKIRCMWKV RDFGCGVELI NRIHKVAEAS GHYPSLHLES PTQVRAELFT SSIGGLSMND FIMAAKIDDI KTSDLSPRKR AWA
Arabidopsis Description
ATP1Probable pterin-4-alpha-carbinolamine dehydratase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU63]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.