Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G129700.1 | Wheat | plastid | 84.29 | 82.33 |
| TraesCS4B01G379500.1 | Wheat | plastid | 83.81 | 80.73 |
| Os03t0100200-01 | Rice | plastid | 58.57 | 60.59 |
| EER93165 | Sorghum | plastid | 59.05 | 58.22 |
| Zm00001d034715_P001 | Maize | plastid | 59.52 | 57.34 |
| GSMUA_Achr2P18260_001 | Banana | plastid | 51.43 | 49.77 |
| VIT_16s0013g00240.t01 | Wine grape | plastid | 49.05 | 49.05 |
| KRH33344 | Soybean | plastid | 46.67 | 45.37 |
| CDY32642 | Canola | plastid | 45.71 | 44.65 |
| Bra029188.1-P | Field mustard | plastid | 44.76 | 43.72 |
| CDY38850 | Canola | plastid | 44.76 | 43.72 |
| KRH70391 | Soybean | plastid | 44.29 | 43.26 |
| AT5G51110.1 | Thale cress | plastid | 44.76 | 42.73 |
| CDX71689 | Canola | cytosol | 18.57 | 37.86 |
| PGSC0003DMT400013443 | Potato | plastid | 37.62 | 37.44 |
| HORVU4Hr1G090300.6 | Barley | plastid | 36.19 | 29.69 |
| TraesCS3A01G241300.1 | Wheat | mitochondrion | 21.9 | 25.99 |
| TraesCS6A01G318200.5 | Wheat | cytosol | 13.81 | 13.3 |
Protein Annotations
| KEGG:00790+4.2.1.96 | MapMan:1.2.1.2.6 | Gene3D:3.30.1360.20 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006729 | GO:GO:0006950 |
| GO:GO:0008124 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009570 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 | GO:GO:0009737 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0071944 | GO:GO:0110102 | InterPro:IPR036428 | InterPro:PCD_sf | PFAM:PF01329 |
| PANTHER:PTHR12599 | PANTHER:PTHR12599:SF8 | InterPro:Pterin_deHydtase | SUPFAM:SSF55248 | EnsemblPlantsGene:TraesCS5A01G545700 | EnsemblPlants:TraesCS5A01G545700.1 |
Description
No Description!
Coordinates
chr5A:+:700442749..700443495
Molecular Weight (calculated)
22704.7 Da
IEP (calculated)
9.302
GRAVY (calculated)
0.053
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MALMLSPAAT FLPVAGKPAA AMRNLLFGTS SKGRSVRKVV AMADILGDFG ARDPFPEEIA SNFGEKTLGN VDTLHRILIP TLSVLSLSRV PLDADPAPLS
101: EEDARKLLFK VVGWRLLFPS KGDSDVLKLE CVWKVRDQAC GDELIARINK TLDGAGHAPA ALQFEAPNQV RAQLYTPSVG GLSANDFIIA ARIDQIKTKD
201: LLPKKRVWAC
101: EEDARKLLFK VVGWRLLFPS KGDSDVLKLE CVWKVRDQAC GDELIARINK TLDGAGHAPA ALQFEAPNQV RAQLYTPSVG GLSANDFIIA ARIDQIKTKD
201: LLPKKRVWAC
001: MAATSSSPPC NISASSLLLR QPSRSILKVF GLLPPVSRNN RKLGRLTVTR SNLAQDFLGD FGARDPYPEE IASQFGDKVL GCQSTEHKIL IPNASVLSLS
101: QLQCSPVSSS QPPLSGDDAR TLLHKVLGWS IVDNEAGGLK IRCMWKVRDF GCGVELINRI HKVAEASGHY PSLHLESPTQ VRAELFTSSI GGLSMNDFIM
201: AAKIDDIKTS DLSPRKRAWA
101: QLQCSPVSSS QPPLSGDDAR TLLHKVLGWS IVDNEAGGLK IRCMWKVRDF GCGVELINRI HKVAEASGHY PSLHLESPTQ VRAELFTSSI GGLSMNDFIM
201: AAKIDDIKTS DLSPRKRAWA
Arabidopsis Description
ATP1Probable pterin-4-alpha-carbinolamine dehydratase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU63]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.