Factsheet for GSMUA_Achr2P18260_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P05640_001
GSMUA_Achr3P07220_001
GSMUA_Achr7P15940_001
GSMUA_Achr9P13850_001
GSMUA_Achr9P15340_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51110.1	GSMUA_Achr3P05640_001	AT2G24550.1	21798944
AT5G51110.1	GSMUA_Achr7P15940_001	AT2G24550.1	21798944
AT5G51110.1	GSMUA_Achr9P13850_001	AT2G24550.1	21798944
AT5G51110.1	GSMUA_Achr10P...	AT3G10970.1	21798944
AT5G51110.1	GSMUA_Achr9P15340_001	AT4G02720.1	21798944
AT5G51110.1	GSMUA_Achr3P07220_001	AT5G08650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0013g00240.t01	Wine grape	plastid	59.45	61.43
KRH33344	Soybean	plastid	54.84	55.09
KRH70391	Soybean	plastid	54.38	54.88
AT5G51110.1	Thale cress	plastid	53.46	52.73
TraesCS5A01G545700.1	Wheat	plastid	49.77	51.43
Bra029188.1-P	Field mustard	plastid	50.23	50.7
CDY38850	Canola	plastid	50.23	50.7
TraesCS4B01G379500.1	Wheat	plastid	50.69	50.46
Zm00001d034715_P001	Maize	plastid	50.23	50.0
Os03t0100200-01	Rice	plastid	46.54	49.75
CDY32642	Canola	plastid	48.85	49.3
TraesCSU01G129700.1	Wheat	plastid	48.39	48.84
EER93165	Sorghum	plastid	47.93	48.83
CDX71689	Canola	cytosol	22.58	47.57
PGSC0003DMT400013443	Potato	plastid	40.09	41.23
GSMUA_Achr3P31150_001	Banana	mitochondrion	23.04	27.32
HORVU4Hr1G090300.6	Barley	plastid	25.35	21.48

Protein Annotations

KEGG:00790+4.2.1.96	MapMan:1.2.1.2.6	Gene3D:3.30.1360.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006729	GO:GO:0006950
GO:GO:0008124	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987
GO:GO:0016043	GO:GO:0071944	GO:GO:0110102	EnsemblPlantsGene:GSMUA_Achr2G18260_001	EnsemblPlants:GSMUA_Achr2P18260_001	EnsemblPlants:GSMUA_Achr2T18260_001
InterPro:IPR036428	UniProt:M0S917	InterPro:PCD_sf	PFAM:PF01329	PANTHER:PTHR12599	PANTHER:PTHR12599:SF8
InterPro:Pterin_deHydtase	SUPFAM:SSF55248	UniParc:UPI000296C10A	SEG:seg	:	:

Description

Putative pterin-4-alpha-carbinolamine dehydratase [Source:GMGC_GENE;Acc:GSMUA_Achr2G18260_001]

Coordinates

chr2:-:18696283..18698954

Molecular Weight (calculated)

23909.8 Da

IEP (calculated)

8.511

GRAVY (calculated)

-0.129

Length

217 amino acids

Sequence
(BLAST)

001: MASASFSFVA PPLASANSLL HGRATLAFPS SSHSASWRSR RRHGHLRLLA QGADLLGDFG ARDPFPEEIE SNFCEKVLGN TDTMHRILIP NISALSLAQM
101: SCEPISSSQP PISTEDAEKL LKKVVGWRLV DGDGGKRIHC LWKVRDYGCG VQLITRIYCV AEAAGHFPNL HLEQPNQVRA ELWTNSIGGL SMNDFIVAAR
201: IDQIKTLDLL PKKRIWA

Best Arabidopsis Sequence Match ( AT5G51110.1 )
(BLAST)

001: MAATSSSPPC NISASSLLLR QPSRSILKVF GLLPPVSRNN RKLGRLTVTR SNLAQDFLGD FGARDPYPEE IASQFGDKVL GCQSTEHKIL IPNASVLSLS
101: QLQCSPVSSS QPPLSGDDAR TLLHKVLGWS IVDNEAGGLK IRCMWKVRDF GCGVELINRI HKVAEASGHY PSLHLESPTQ VRAELFTSSI GGLSMNDFIM
201: AAKIDDIKTS DLSPRKRAWA

Arabidopsis Description

ATP1Probable pterin-4-alpha-carbinolamine dehydratase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU63]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.