Factsheet for GSMUA_Achr10P00320_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P18760_001
GSMUA_Achr3P12410_001
GSMUA_Achr3P32460_001
GSMUA_Achr6P06410_001
GSMUA_Achr6P20920_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10970.1	GSMUA_Achr6P06410_001	AT3G48550.1	21798944
AT3G10970.1	GSMUA_Achr6P20920_001	AT3G48550.1	21798944
AT3G10970.1	GSMUA_Achr1P18760_001	AT3G61150.1	21798944
AT3G10970.1	GSMUA_Achr3P12410_001	AT3G61150.1	21798944
AT3G10970.1	GSMUA_Achr3P32460_001	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0168300-01	Rice	plastid	70.0	70.99
TraesCS1D01G113400.1	Wheat	plastid	69.17	69.94
TraesCS1A01G111900.1	Wheat	plastid	69.17	69.94
VIT_13s0067g02440.t01	Wine grape	plastid	69.72	69.72
CDY69318	Canola	cytosol	17.22	69.66
TraesCS1B01G132100.1	Wheat	plastid	68.61	69.38
KXG21417	Sorghum	plastid	68.06	68.44
HORVU1Hr1G024580.5	Barley	plastid	68.61	66.94
AT3G10970.1	Thale cress	plastid	65.0	64.11
Solyc06g050310.2.1	Tomato	plastid	63.89	64.07
KRG97648	Soybean	plastid	64.44	63.56
CDY00981	Canola	plastid	62.5	62.15
KRH31223	Soybean	plastid	62.78	61.75
Bra029883.1-P	Field mustard	plastid	61.94	61.26
CDY08561	Canola	plastid	61.94	61.26
Zm00001d037512_P001	Maize	cytosol	63.06	56.47
GSMUA_Achr5P20620_001	Banana	plastid	20.83	21.37
GSMUA_Achr3P14430_001	Banana	cytosol	22.78	21.19
GSMUA_Achr7P04430_001	Banana	plastid	19.44	20.47
GSMUA_Achr1P17450_001	Banana	cytosol, golgi, plastid	22.22	18.31

Protein Annotations

EnsemblPlants:GSMUA_Achr10P00320_001	EnsemblPlants:GSMUA_Achr10T00320_001	EnsemblPlantsGene:GSMUA_Achr10G00320_001	Gene3D:1.10.150.240	Gene3D:3.40.50.1000	InterPro:HAD-like_sf
InterPro:HAD_sf	InterPro:IPR023198	InterPro:IPR023214	InterPro:PGP-like_dom2	ncoils:Coil	PANTHER:PTHR18901
PANTHER:PTHR18901:SF29	PFAM:PF13419	SEG:seg	SUPFAM:SSF56784	UniParc:UPI000294882E	UniProt:M0RE59
MapMan:35.1	:	:	:	:	:

Description

Putative Phosphorylated carbohydrates phosphatase TM_1254 [Source:GMGC_GENE;Acc:GSMUA_Achr10G00320_001]

Coordinates

chr10:-:854679..864223

Molecular Weight (calculated)

40522.9 Da

IEP (calculated)

7.036

GRAVY (calculated)

-0.244

Length

360 amino acids

Sequence
(BLAST)

001: MECSIRSSSL VPPRPASRLG TSSVPAKPRL VGLKPSIARS RLVFCRAAGS DDKDLGNGFP RVTSKVFVEE AIGAEYGEGF ETFRMDGPLK VDVDYLNDKL
101: QECFLQRVRH AMKPDEAFGL IFSWDNVVAD TRSLKLDAWR QLASEEGNEF SSDRHINKLI LHTAADHVLR KVLCWEEEES ELERLKSRLS QLYYENLIKL
201: DAPVEGLKEW LDAVHTAGIP CAIVSCLDRR YMHESLQKMG LKKYFQAIVT EEDGMESIAH RFLSAAVKMD RKPSKCIVFE DDPRGITAAH NCTMMAVALI
301: GAHPAYELVQ ADLAVASFSE LSVINLRRLF AHKGSSFMDL QKQIIEKSPP KRKLMTDTIY

Best Arabidopsis Sequence Match ( AT3G10970.1 )
(BLAST)

001: MDCSCSTRPS SLLISSEPSF RFPHSNFSSN LSFQIPKDTK LVKQRLVVRS SSGSDYQNGD VNGFPLKPNK LFMQEAIGAE YGEGFETFRQ DGPLKVDVDF
101: WNEKLQDGFL QRIRYAMKPD EAYGLIFSWD NVVADTRSLK LEAWKQLAAE EGKEITEEVD IQRLMLYAGA DHVLRKVLFW EKTQSKIDRL KLRLSEIYYD
201: SLLKLTEPKE GLRDWLDAVT TARIPCAVVS NLDRKNMINA LERMGLQKYF QAVVSEEDGM ESIAHRFLSA AVKLDRKPSK CVVFEDDPRG ITAAHNCTMM
301: AVGLIGAHRA YDLVQADLAV GNFYELSVIN LRRLFANKGS TFMDHEKQII EKSPPKRKLT IDTIF

Arabidopsis Description

Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J510]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.