Factsheet for Bra029883.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003439.1-P
Bra006136.1-P
Bra018049.1-P
Bra023354.1-P
Bra029904.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10970.1	Bra018049.1-P	AT3G48550.1	21798944
AT3G10970.1	Bra029904.1-P	AT3G48550.1	21798944
AT3G10970.1	Bra003439.1-P	AT3G61150.1	21798944
AT3G10970.1	Bra006136.1-P	AT5G11980.1	21798944
AT3G10970.1	Bra023354.1-P	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08561	Canola	plastid	97.53	97.53
AT3G10970.1	Thale cress	plastid	90.38	90.14
KRG97648	Soybean	plastid	66.76	66.58
KRH31223	Soybean	plastid	66.21	65.85
Solyc06g050310.2.1	Tomato	plastid	64.56	65.46
VIT_13s0067g02440.t01	Wine grape	plastid	64.29	65.0
Os05t0168300-01	Rice	plastid	61.54	63.1
GSMUA_Achr10P...	Banana	plastid	61.26	61.94
TraesCS1A01G111900.1	Wheat	plastid	60.16	61.52
TraesCS1D01G113400.1	Wheat	plastid	60.16	61.52
TraesCS1B01G132100.1	Wheat	plastid	59.89	61.24
KXG21417	Sorghum	plastid	59.62	60.61
HORVU1Hr1G024580.5	Barley	plastid	60.44	59.62
Zm00001d037512_P001	Maize	cytosol	56.04	50.75
Bra035213.1-P	Field mustard	plastid	23.9	24.23

Protein Annotations

EnsemblPlants:Bra029883.1	EnsemblPlants:Bra029883.1-P	EnsemblPlantsGene:Bra029883	Gene3D:1.10.150.240	Gene3D:3.40.50.1000	InterPro:HAD-like_sf
InterPro:HAD_sf	InterPro:IPR023198	InterPro:IPR023214	InterPro:PGP-like_dom2	PANTHER:PTHR18901	PANTHER:PTHR18901:SF29
PFAM:PF13419	SEG:seg	SUPFAM:SSF56784	UniParc:UPI0002547842	UniProt:M4EM63	MapMan:35.1

Description

AT3G10970 (E=2e-183) | haloacid dehalogenase-like hydrolase family protein

Coordinates

chrA05:+:21867533..21870343

Molecular Weight (calculated)

41238.5 Da

IEP (calculated)

6.274

GRAVY (calculated)

-0.326

Length

364 amino acids

Sequence
(BLAST)

001: MDCSCSTRPS SLLISSEPSL RFPPSNLSLL IPRDTKLVKH QQQRMVVRSC SSGSGQNGDV DGFALKPNKL FMQEAIGAEY GEGFETFRQD GPLKVDVDFW
101: NEKLQDGFLQ RIRYAMKPDE AYGLIFSWDN VVADTRSLKL DAWKQLAAEE GKEIAEENDI QRLMLYAGAD HVLSKVLFWE KTQSKIDTLK LRLSEIYYDN
201: LLRLTEPKEG LRDWLDAVTN ARIPCAVVSN LDRKNMMNAL ERMGLQNYFQ AVVSEEDGME SIAHRFLSAA VKLDRKPAKC VVFEDDPRGI TAAHNCTMMA
301: IGLIGAHRAY DLVQADLAVG NFYELSVINL RRLFANKGST FMEHEKQIIE KSPPKRKLTI DTIF

Best Arabidopsis Sequence Match ( AT3G10970.1 )
(BLAST)

001: MDCSCSTRPS SLLISSEPSF RFPHSNFSSN LSFQIPKDTK LVKQRLVVRS SSGSDYQNGD VNGFPLKPNK LFMQEAIGAE YGEGFETFRQ DGPLKVDVDF
101: WNEKLQDGFL QRIRYAMKPD EAYGLIFSWD NVVADTRSLK LEAWKQLAAE EGKEITEEVD IQRLMLYAGA DHVLRKVLFW EKTQSKIDRL KLRLSEIYYD
201: SLLKLTEPKE GLRDWLDAVT TARIPCAVVS NLDRKNMINA LERMGLQKYF QAVVSEEDGM ESIAHRFLSA AVKLDRKPSK CVVFEDDPRG ITAAHNCTMM
301: AVGLIGAHRA YDLVQADLAV GNFYELSVIN LRRLFANKGS TFMDHEKQII EKSPPKRKLT IDTIF

Arabidopsis Description

Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J510]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.