Factsheet for Solyc06g050310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g087650.2.1
Solyc01g091630.2.1
Solyc03g112920.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10970.1	Solyc03g112920.1.1	AT3G48550.1	21798944
AT3G10970.1	Solyc01g091630.2.1	AT3G61150.1	21798944
AT3G10970.1	Solyc01g087650.2.1	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69318	Canola	cytosol	18.94	76.4
VIT_13s0067g02440.t01	Wine grape	plastid	69.92	69.72
AT3G10970.1	Thale cress	plastid	66.85	65.75
KRG97648	Soybean	plastid	66.3	65.21
CDY00981	Canola	plastid	65.74	65.19
Bra029883.1-P	Field mustard	plastid	65.46	64.56
CDY08561	Canola	plastid	65.18	64.29
KRH31223	Soybean	plastid	65.18	63.93
GSMUA_Achr10P...	Banana	plastid	64.07	63.89
Os05t0168300-01	Rice	plastid	61.28	61.97
TraesCS1D01G113400.1	Wheat	plastid	59.89	60.39
TraesCS1A01G111900.1	Wheat	plastid	59.61	60.11
TraesCS1B01G132100.1	Wheat	plastid	59.33	59.83
KXG21417	Sorghum	plastid	58.22	58.38
HORVU1Hr1G024580.5	Barley	plastid	59.89	58.27
Zm00001d037512_P001	Maize	cytosol	53.48	47.76
Solyc08g081030.1.1	Tomato	cytosol, plastid	20.89	19.74

Protein Annotations

Gene3D:1.10.150.240	Gene3D:3.40.50.1000	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023198
InterPro:IPR023214	UniProt:K4C5H6	PFAM:PF13419	InterPro:PGP-like_dom2	PANTHER:PTHR18901	PANTHER:PTHR18901:SF29
SUPFAM:SSF56784	EnsemblPlantsGene:Solyc06g050310.2	EnsemblPlants:Solyc06g050310.2.1	UniParc:UPI000276693C	:	:

Description

No Description!

Coordinates

chr6:-:32920601..32928596

Molecular Weight (calculated)

40477.5 Da

IEP (calculated)

6.196

GRAVY (calculated)

-0.307

Length

359 amino acids

Sequence
(BLAST)

001: MEATRSCSQA HLPLQSISFP PQFYKKFQFT KSKPSNSHPR LVIAKALGTG DNGDFEHFTA TPNKIFMEEA IGAEYGEGFE TFRPNGLLKV DVDFLNDRLQ
101: EGFLRRIRYA MKPDEAYGLI FSWDNVVADS RALMLDAWNQ LASEEGLELP EDDSVQRLLL YATADHILHK ALAGEKNEAD QDRLKTRLSH LYQDKLLKIS
201: EPIEGLKEWL DAVSTARIPC AVVSSFDRRN MVEALERMGL MKYFQAIVTE EDGMESIAHR FLSAAVKLDR KPSKCVVFED DPRGITAAHN CTMMAVALIG
301: AHPAYDLGQA DLAVGSFSEL SVINLRRLYA HKGSNFMDLE KQIAEKAPRR RKLTIDTIF

Best Arabidopsis Sequence Match ( AT3G10970.1 )
(BLAST)

001: MDCSCSTRPS SLLISSEPSF RFPHSNFSSN LSFQIPKDTK LVKQRLVVRS SSGSDYQNGD VNGFPLKPNK LFMQEAIGAE YGEGFETFRQ DGPLKVDVDF
101: WNEKLQDGFL QRIRYAMKPD EAYGLIFSWD NVVADTRSLK LEAWKQLAAE EGKEITEEVD IQRLMLYAGA DHVLRKVLFW EKTQSKIDRL KLRLSEIYYD
201: SLLKLTEPKE GLRDWLDAVT TARIPCAVVS NLDRKNMINA LERMGLQKYF QAVVSEEDGM ESIAHRFLSA AVKLDRKPSK CVVFEDDPRG ITAAHNCTMM
301: AVGLIGAHRA YDLVQADLAV GNFYELSVIN LRRLFANKGS TFMDHEKQII EKSPPKRKLT IDTIF

Arabidopsis Description

Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J510]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.