Factsheet for Zm00001d037512_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003978_P001
Zm00001d006805_P001
Zm00001d016564_P001
Zm00001d021236_P004
Zm00001d026088_P002
Zm00001d028871_P001
Zm00001d040090_P002
Zm00001d040091_P001
Zm00001d053677_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10970.1	Zm00001d003978_P001	AT3G48550.1	21798944
AT3G10970.1	Zm00001d016564_P001	AT3G48550.1	21798944
AT3G10970.1	Zm00001d021236_P004	AT3G61150.1	21798944
AT3G10970.1	Zm00001d026088_P002	AT3G61150.1	21798944
AT3G10970.1	Zm00001d040090_P002	AT3G61150.1	21798944
AT3G10970.1	Zm00001d040091_P001	AT3G61150.1	21798944
AT3G10970.1	Zm00001d006805_P001	AT5G11980.1	21798944
AT3G10970.1	Zm00001d028871_P001	AT5G11980.1	21798944
AT3G10970.1	Zm00001d053677_P001	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG21417	Sorghum	plastid	77.61	87.15
Os05t0168300-01	Rice	plastid	73.38	83.1
TraesCS1D01G113400.1	Wheat	plastid	70.4	79.49
TraesCS1B01G132100.1	Wheat	plastid	70.4	79.49
TraesCS1A01G111900.1	Wheat	plastid	69.9	78.93
HORVU1Hr1G024580.5	Barley	plastid	70.4	76.69
GSMUA_Achr10P...	Banana	plastid	56.47	63.06
AT3G10970.1	Thale cress	plastid	51.99	57.26
KRG97648	Soybean	plastid	50.99	56.16
Bra029883.1-P	Field mustard	plastid	50.75	56.04
CDY00981	Canola	plastid	50.25	55.8
CDY08561	Canola	plastid	50.5	55.77
KRH31223	Soybean	plastid	50.75	55.74
VIT_13s0067g02440.t01	Wine grape	plastid	49.75	55.56
CDY69318	Canola	cytosol	11.94	53.93
Solyc06g050310.2.1	Tomato	plastid	47.76	53.48
Zm00001d005329_P001	Maize	plastid	18.66	19.43
Zm00001d026148_P002	Maize	endoplasmic reticulum	17.91	16.25

Protein Annotations

EnsemblPlants:Zm00001d037512_P001	EnsemblPlants:Zm00001d037512_T001	EnsemblPlantsGene:Zm00001d037512	Gene3D:1.10.150.240	Gene3D:3.40.50.1000	GO:GO:0003674
GO:GO:0003824	GO:GO:0016787	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023198	InterPro:IPR023214
InterPro:PGP-like_dom2	PANTHER:PTHR18901	PANTHER:PTHR18901:SF29	PFAM:PF13419	ProteinID:AQK84169.1	SEG:seg
SUPFAM:SSF56784	UniParc:UPI00084333ED	UniProt:A0A1D6LYF1	MapMan:35.1	:	:

Description

Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

Coordinates

chr6:+:127655622..127659899

Molecular Weight (calculated)

44750.1 Da

IEP (calculated)

8.726

GRAVY (calculated)

-0.288

Length

402 amino acids

Sequence
(BLAST)

001: MECAAEGGGG RRPRASGAGR DAGVACRGEI WRRQARGGGD GMGEKWENPI TAPRLHCYPS LPLCFPLPME SCSFRAATAP SPFPSAPSSS SSPRAPCPIL
101: RFPRPRKGRQ IGVRRRASGF DAFASFAGKV FVDEAIGAEY GEGFETFRMD GPLKVDVDYL NEKLQECFLQ RIRHAMKPDE AFGLIFSWDN VIADTDSLKL
201: NAWRQLALEE GKDIPSGAHV RKSIIHGAAD HVLRKVLYWA KEEDKMEKLK ARLIELYYEN LFKLDTPVEG LREWLDAVQT AGIPCAVASP LDRRCMIEAL
301: DRMALSKYFK LDRKPSKCVV FEDDPRGVTA AHNCTMMAVA LIGAHPAYEL VQADLAIAKY SELSVINLRR LFANKGISFM DLQKQIIEKS PPKRRLTVDT
401: IF

Best Arabidopsis Sequence Match ( AT3G10970.1 )
(BLAST)

001: MDCSCSTRPS SLLISSEPSF RFPHSNFSSN LSFQIPKDTK LVKQRLVVRS SSGSDYQNGD VNGFPLKPNK LFMQEAIGAE YGEGFETFRQ DGPLKVDVDF
101: WNEKLQDGFL QRIRYAMKPD EAYGLIFSWD NVVADTRSLK LEAWKQLAAE EGKEITEEVD IQRLMLYAGA DHVLRKVLFW EKTQSKIDRL KLRLSEIYYD
201: SLLKLTEPKE GLRDWLDAVT TARIPCAVVS NLDRKNMINA LERMGLQKYF QAVVSEEDGM ESIAHRFLSA AVKLDRKPSK CVVFEDDPRG ITAAHNCTMM
301: AVGLIGAHRA YDLVQADLAV GNFYELSVIN LRRLFANKGS TFMDHEKQII EKSPPKRKLT IDTIF

Arabidopsis Description

Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J510]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.