Factsheet for VIT_13s0067g02440.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g01350.t01
VIT_15s0048g02000.t01
VIT_17s0000g01360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10970.1	VIT_17s0000g01360.t01	AT3G48550.1	21798944
AT3G10970.1	VIT_15s0048g02000.t01	AT3G61150.1	21798944
AT3G10970.1	VIT_04s0008g01350.t01	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69318	Canola	cytosol	17.5	70.79
Solyc06g050310.2.1	Tomato	plastid	69.72	69.92
GSMUA_Achr10P...	Banana	plastid	69.72	69.72
KRG97648	Soybean	plastid	66.94	66.03
AT3G10970.1	Thale cress	plastid	66.94	66.03
CDY00981	Canola	plastid	65.56	65.19
CDY08561	Canola	plastid	65.28	64.56
Bra029883.1-P	Field mustard	plastid	65.0	64.29
KRH31223	Soybean	plastid	65.28	64.21
Os05t0168300-01	Rice	plastid	62.22	63.1
KXG21417	Sorghum	plastid	61.39	61.73
TraesCS1A01G111900.1	Wheat	plastid	60.0	60.67
TraesCS1D01G113400.1	Wheat	plastid	60.0	60.67
TraesCS1B01G132100.1	Wheat	plastid	59.44	60.11
HORVU1Hr1G024580.5	Barley	plastid	60.0	58.54
Zm00001d037512_P001	Maize	cytosol	55.56	49.75
VIT_02s0025g03520.t01	Wine grape	cytosol	24.17	23.58

Protein Annotations

Gene3D:1.10.150.240	EntrezGene:100262145	wikigene:100262145	Gene3D:3.40.50.1000	MapMan:35.1	ProteinID:CBI25389
ProteinID:CBI25389.3	UniProt:D7T4F7	EMBL:FN595514	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023198
InterPro:IPR023214	EntrezGene:LOC100262145	wikigene:LOC100262145	PFAM:PF13419	InterPro:PGP-like_dom2	PANTHER:PTHR18901
PANTHER:PTHR18901:SF29	SUPFAM:SSF56784	TIGR:TC59980	UniParc:UPI0001984684	ArrayExpress:VIT_13s0067g02440	EnsemblPlantsGene:VIT_13s0067g02440
EnsemblPlants:VIT_13s0067g02440.t01	unigene:Vvi.3336	RefSeq:XP_002274357	RefSeq:XP_002274357.1	SEG:seg	:

Description

No Description!

Coordinates

chr13:+:1330450..1336784

Molecular Weight (calculated)

40425.7 Da

IEP (calculated)

6.534

GRAVY (calculated)

-0.282

Length

360 amino acids

Sequence
(BLAST)

001: MECSFRSSYL LPRRPSLLLG DSQFPAKLRS SKLKGSNLVN RPVIKNACGF GENGSVNGSP ITPNKVFMEE AIGAEYGEGF ESFRPNGLLK VDVDFLNNRL
101: QEGFLKRIRY AMKPDEAYGL IFSWDNVVAD TRSLKLNAWK QLASEEGKEI PEDSDVQRLM LCAGADHVLR KLLLWETSES ELDRLKSRLS QLYYDNLLEL
201: RKPVEGLEEW LDAVSTSRIP CAVVSSLDRK NMVEALEGMG IKKYFQAIVT EEDGMESMAH RLLSAAMKLD RKPSKCVVFE DDPRGVTAAH NCTMMAVALI
301: GAYPAYDLEQ ADLAVGSFNE LSVINLRRLF AHRGSDFMDL QKQIVGKAPP RRRITTDTIF

Best Arabidopsis Sequence Match ( AT3G10970.1 )
(BLAST)

001: MDCSCSTRPS SLLISSEPSF RFPHSNFSSN LSFQIPKDTK LVKQRLVVRS SSGSDYQNGD VNGFPLKPNK LFMQEAIGAE YGEGFETFRQ DGPLKVDVDF
101: WNEKLQDGFL QRIRYAMKPD EAYGLIFSWD NVVADTRSLK LEAWKQLAAE EGKEITEEVD IQRLMLYAGA DHVLRKVLFW EKTQSKIDRL KLRLSEIYYD
201: SLLKLTEPKE GLRDWLDAVT TARIPCAVVS NLDRKNMINA LERMGLQKYF QAVVSEEDGM ESIAHRFLSA AVKLDRKPSK CVVFEDDPRG ITAAHNCTMM
301: AVGLIGAHRA YDLVQADLAV GNFYELSVIN LRRLFANKGS TFMDHEKQII EKSPPKRKLT IDTIF

Arabidopsis Description

Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J510]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.