CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00641
KRH03966
KRH07953
KRH40539
KRH48236
KRH57236
KRH65144
KRH69706

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10970.1	KRH03966	AT3G48550.1	21798944
AT3G10970.1	KRH57236	AT3G48550.1	21798944
AT3G10970.1	KRH00641	AT3G61150.1	21798944
AT3G10970.1	KRH40539	AT3G61150.1	21798944
AT3G10970.1	KRH48236	AT3G61150.1	21798944
AT3G10970.1	KRH65144	AT3G61150.1	21798944
AT3G10970.1	KRH07953	AT5G11980.1	21798944
AT3G10970.1	KRH69706	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31223	Soybean	plastid	86.58	86.34
CDY69318	Canola	cytosol	18.08	74.16
CDY00981	Canola	plastid	66.58	67.13
CDY08561	Canola	plastid	66.85	67.03
VIT_13s0067g02440.t01	Wine grape	plastid	66.03	66.94
Bra029883.1-P	Field mustard	plastid	66.58	66.76
AT3G10970.1	Thale cress	plastid	66.58	66.58
Solyc06g050310.2.1	Tomato	plastid	65.21	66.3
GSMUA_Achr10P...	Banana	plastid	63.56	64.44
Os05t0168300-01	Rice	plastid	61.92	63.66
TraesCS1A01G111900.1	Wheat	plastid	60.82	62.36
TraesCS1D01G113400.1	Wheat	plastid	60.55	62.08
KXG21417	Sorghum	plastid	60.82	62.01
TraesCS1B01G132100.1	Wheat	plastid	60.27	61.8
HORVU1Hr1G024580.5	Barley	plastid	59.73	59.08
Zm00001d037512_P001	Maize	cytosol	56.16	50.99
KRH59874	Soybean	plastid	21.64	20.95
KRH41172	Soybean	plastid	21.64	20.95

Protein Annotations

Gene3D:1.10.150.240	EntrezGene:100800218	Gene3D:3.40.50.1000	MapMan:35.1	EMBL:ACUP02010804	EnsemblPlantsGene:GLYMA_18G021400
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0016791
InterPro:HAD-like_sf	InterPro:HAD_sf	UniProt:I1MYW9	InterPro:IPR023198	InterPro:IPR023214	EnsemblPlants:KRG97648
ProteinID:KRG97648	ProteinID:KRG97648.1	PFAM:PF13419	InterPro:PGP-like_dom2	PANTHER:PTHR18901	PANTHER:PTHR18901:SF29
SUPFAM:SSF56784	UniParc:UPI000233EE30	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:1570062..1576262

Molecular Weight (calculated)

41314.6 Da

IEP (calculated)

6.724

GRAVY (calculated)

-0.228

Length

365 amino acids

Sequence
(BLAST)

001: MDFTTFANSI SSSHAIPPIH TYRLQPSPFP LHLPFSNLKR SGLVKNRLIA RCTSMSDEFG SVNGLQFSPN KLFVEEAIGA EYGEGFETFR ADGPLKVDVD
101: YLNEKLQDGF LQRIRYAMKP DEAYGLIFSW DNVVAGTRAL KRKAWEQLAF EEGKDIPEGD MHKLLFYAGA DYVLHKFFLS DKAENELNRL KLRFSQIYYD
201: NLVRLEKPMD GLNDWLEAVY TARIPCAVVS SLDRRNMLEA LERMGLSKYF QAIVTEEDGM ESIAHRFLSA AVKLDRKPSK CVVFEDDPRG VTAAHNCTMM
301: AVALIGAHPA YDLGQADLTV ANFSELSVIN LRRLFANKGS SFMDLQKQII EKAPPKRKLT IDTIF

Best Arabidopsis Sequence Match ( AT3G10970.1 )
(BLAST)

001: MDCSCSTRPS SLLISSEPSF RFPHSNFSSN LSFQIPKDTK LVKQRLVVRS SSGSDYQNGD VNGFPLKPNK LFMQEAIGAE YGEGFETFRQ DGPLKVDVDF
101: WNEKLQDGFL QRIRYAMKPD EAYGLIFSWD NVVADTRSLK LEAWKQLAAE EGKEITEEVD IQRLMLYAGA DHVLRKVLFW EKTQSKIDRL KLRLSEIYYD
201: SLLKLTEPKE GLRDWLDAVT TARIPCAVVS NLDRKNMINA LERMGLQKYF QAVVSEEDGM ESIAHRFLSA AVKLDRKPSK CVVFEDDPRG ITAAHNCTMM
301: AVGLIGAHRA YDLVQADLAV GNFYELSVIN LRRLFANKGS TFMDHEKQII EKSPPKRKLT IDTIF

Arabidopsis Description

Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J510]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.