CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95612
KRH03466
KRH32094
KRH54542
KRH55381
KRH56919
KRH63357
KRH67287

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11980.1	KRH03466	AT3G47620.1	21798944
AT5G11980.1	KRH54542	AT3G47620.1	21798944
AT5G11980.1	KRH56919	AT3G47620.1	21798944
AT5G11980.1	KRH63357	AT3G47620.1	21798944
AT5G11980.1	KRG95612	AT4G02590.1	21798944
AT5G11980.1	KRH32094	AT4G02590.1	21798944
AT5G11980.1	KRH55381	AT4G02590.1	21798944
AT5G11980.1	KRH67287	AT4G02590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07953	Soybean	cytosol	91.55	91.87
VIT_04s0008g01350.t01	Wine grape	cytosol	78.1	79.33
PGSC0003DMT400017657	Potato	nucleus	77.93	78.34
Bra023354.1-P	Field mustard	cytosol	76.21	77.68
Solyc01g087650.2.1	Tomato	plastid	76.55	77.08
AT5G11980.1	Thale cress	cytosol	75.0	76.45
Bra006136.1-P	Field mustard	cytosol, nucleus, peroxisome	75.17	73.15
EER92716	Sorghum	cytosol	64.83	63.41
Os12t0538300-01	Rice	cytosol	64.66	61.48
TraesCS5B01G101300.1	Wheat	cytosol	63.97	60.92
TraesCS5D01G107800.1	Wheat	cytosol	63.97	60.92
TraesCS5A01G095100.1	Wheat	cytosol	63.97	60.13
HORVU5Hr1G025740.13	Barley	vacuole	64.31	57.74
Zm00001d028871_P001	Maize	nucleus	9.66	50.91
Zm00001d006805_P001	Maize	cytosol, mitochondrion, nucleus	9.48	50.0
Zm00001d053677_P001	Maize	cytosol, mitochondrion, nucleus	9.48	50.0
GSMUA_Achr3P32460_001	Banana	extracellular, nucleus, plasma membrane	36.21	49.07
CDY04606	Canola	cytosol	7.24	42.86

Protein Annotations

EntrezGene:100788776	MapMan:22.6.2.8	EMBL:ACUP02000728	InterPro:COG8	InterPro:COG8_Metazoal_Plant	InterPro:Cullin_repeat-like_dom_sf
EnsemblPlantsGene:GLYMA_02G043400	GO:GO:0000139	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006891	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0017119	UniProt:I1JCC5	EnsemblPlants:KRH69706	ProteinID:KRH69706	ProteinID:KRH69706.1	PFAM:PF04124
PIRSF:PIRSF015415	PANTHER:PTHR21311	SUPFAM:SSF74788	UniParc:UPI0002337884	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:-:4049655..4055760

Molecular Weight (calculated)

64616.3 Da

IEP (calculated)

4.575

GRAVY (calculated)

-0.161

Length

580 amino acids

Sequence
(BLAST)

001: MESATVSSSE SETALPLPLA SESQQPYVSE LLSFTLDRLH KEPELLRVDA DRIRRQMQEV AVGNYRSFIA AADALIAIRQ EVSSIDNHLE SLINEIPKLT
101: SGCTEFIESA ERILEKRKMN QTMLTNHSTL LDLLEIPQLM DTCVRNGNYD EALDLEAFVG KLSTMHPKLP VIQALAADVR LTTQSLLSQL LQKLRSNIQL
201: PECLRIIGYL RRIGVFSEYG MRLLFLRCRE AWLTGILEDL DQANPYEYLK GMINCHRMHL FDVVNQYRAI FADDTSGSEE NYDGGLLFSW AMHQITSHLQ
301: TLKVMLPKIT EGGSLSNILD QCMYCAMGLG WVGLDFRGLL PSLFEEAVLN LFSKNMSSAV ENFQLVLDSH RWVPLPGVGF SAHTVGDENH EDVTPPSNLM
401: EHPPLAVFIN GVSAAMNELR PCAPISLKHV LAQELIKGLQ AVSDSLLLYN TTRVLRSNES GLFLSLCWAF IEAAYPHCAT CFGRCYLGGA TLIMDAKNVY
501: NGISRLLETS SARELPKPVN NVESKSVAEN GESPKMENGE TPDAKESEAV NSEEVNEEGT EEGPTLQTDR EDTNLEKPLE

Best Arabidopsis Sequence Match ( AT5G11980.1 )
(BLAST)

001: MAMEVGEMSQ PEATASLLSL ASATQQPYVS ELLSFTLDRL HKEPELLRVD AERIQRQMQE VAVGNYRAFI TAADALLAIR QEVSSIDKHL ESLIGEVPKL
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ATIVMDAKSA
501: YEGLGRILAA SSSQEPSNKS PKVISTDTKD ASENGVASQP EEKQAENPNA KEEDNSPIPL QTPEITPES

Arabidopsis Description

Conserved oligomeric Golgi complex component-related / COG complex component-like protein [Source:UniProtKB/TrEMBL;Acc:Q84K25]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.