CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
nucleus 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93695
KRG94592
KRH01133
KRH01571
KRH03461
KRH06898
KRH14475
KRH21929
KRH21930
KRH21931
KRH26162
KRH39622
KRH40128
KRH44917
KRH49908
KRH55034
KRH56921
KRH70543
KRH73670
KRH74300

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02590.1	KRH44917	AT1G22630.1	21798944
AT4G02590.1	KRH21929	AT1G78680.1	21798944
AT4G02590.1	KRH21930	AT1G78680.1	21798944
AT4G02590.1	KRH21931	AT1G78680.1	21798944
AT4G02590.1	KRH26162	AT2G24020.1	21798944
AT4G02590.1	KRH55034	AT2G24020.1	21798944
AT4G02590.1	KRH14475	AT2G42870.1	21798944
AT4G02590.1	KRH73670	AT2G42870.1	21798944
AT4G02590.1	KRH01133	AT3G28715.1	21798944
AT4G02590.1	KRH40128	AT3G28715.1	21798944
AT4G02590.1	KRH03461	AT3G47640.1	21798944
AT4G02590.1	KRH56921	AT3G47640.1	21798944
AT4G02590.1	KRH49908	AT4G25315.1	21798944
AT4G02590.1	KRG94592	AT5G14070.1	21798944
AT4G02590.1	KRH01571	AT5G14070.1	21798944
AT4G02590.1	KRH06898	AT5G14070.1	21798944
AT4G02590.1	KRH70543	AT5G14070.1	21798944
AT4G02590.1	KRG93695	AT5G15802.1	21798944
AT4G02590.1	KRH39622	AT5G45620.1	21798944
AT4G02590.1	KRH74300	AT5G45620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71345	Soybean	nucleus	76.81	29.94
KRH72281	Soybean	nucleus, plastid	50.72	28.0
Bra036256.1-P	Field mustard	nucleus	68.12	20.61
KRH32094	Soybean	nucleus	82.61	20.14
KRG95612	Soybean	nucleus	78.26	18.49
KRH67287	Soybean	nucleus	78.26	18.49
Bra018539.1-P	Field mustard	nucleus	66.67	18.11
VIT_07s0141g00220.t01	Wine grape	nucleus	75.36	17.99
PGSC0003DMT400049768	Potato	nucleus	72.46	16.56
Solyc09g065820.2.1	Tomato	nucleus	72.46	16.56
GSMUA_Achr5P03100_001	Banana	nucleus	65.22	16.42
OQU88567	Sorghum	nucleus	65.22	16.25
Zm00001d018967_P001	Maize	nucleus	65.22	15.79
CDX91293	Canola	nucleus	68.12	15.77
CDY21898	Canola	nucleus	68.12	15.61
CDY22062	Canola	nucleus	68.12	15.46
CDY18011	Canola	nucleus	68.12	15.46
CDX97278	Canola	nucleus	66.67	15.38
TraesCS5A01G441900.1	Wheat	nucleus	62.32	15.3
TraesCS5B01G445900.1	Wheat	nucleus	62.32	15.3
TraesCS5D01G449200.1	Wheat	nucleus	62.32	15.3
Bra000872.1-P	Field mustard	nucleus	68.12	15.21
AT4G02590.1	Thale cress	nucleus	68.12	15.16
CDX90930	Canola	nucleus	68.12	15.16
KXG37359	Sorghum	nucleus	62.32	15.14
Zm00001d013073_P002	Maize	nucleus	62.32	15.09
GSMUA_Achr4P21070_001	Banana	nucleus	65.22	15.0
CDY18143	Canola	nucleus	65.22	14.71
Os03t0797600-01	Rice	nucleus	62.32	14.63
Bra033368.1-P	Field mustard	nucleus	65.22	14.47
CDX89919	Canola	nucleus	65.22	14.47
HORVU5Hr1G106310.3	Barley	nucleus	62.32	13.78
KRH34087	Soybean	nucleus	63.77	13.41
KRG92679	Soybean	nucleus	63.77	13.25
AT1G03040.3	Thale cress	nucleus	63.77	13.21
GSMUA_Achr9P25560_001	Banana	nucleus	63.77	12.46
KRH71636	Soybean	golgi, plasma membrane, vacuole	26.09	11.76
KRH03075	Soybean	nucleus	53.62	10.08
Os07t0182200-01	Rice	cytosol	17.39	8.82
KRH04711	Soybean	plastid	20.29	8.75
KRH12909	Soybean	nucleus	56.52	8.21
KRH37912	Soybean	nucleus	56.52	7.96
KRH76132	Soybean	nucleus	20.29	7.65
KRH04595	Soybean	nucleus	21.74	5.51
KRH28453	Soybean	nucleus	23.19	5.5
KRH15381	Soybean	nucleus	21.74	5.05
KRH05665	Soybean	nucleus	21.74	5.05
KRH32290	Soybean	nucleus	30.43	4.28
KRH54630	Soybean	nucleus	24.64	4.23
KRH65412	Soybean	nucleus	23.19	4.03
KRH71344	Soybean	cytosol	4.35	4.0
KRH77016	Soybean	nucleus	21.74	4.0
KRH67519	Soybean	nucleus	28.99	3.98
KRH19683	Soybean	nucleus	28.99	3.93
KRH69138	Soybean	cytosol, nucleus, vacuole	10.14	3.89
KRH33663	Soybean	nucleus	21.74	3.34
KRG99030	Soybean	nucleus	26.09	3.29
KRH68348	Soybean	nucleus	24.64	3.29
KRH45975	Soybean	nucleus	24.64	3.24
KRH73584	Soybean	nucleus	26.09	3.2
KRH75301	Soybean	nucleus	20.29	3.06
KRH68390	Soybean	nucleus	27.54	3.04
KRH33733	Soybean	nucleus	30.43	3.04
KRH14535	Soybean	nucleus	24.64	3.02
KRG88937	Soybean	nucleus	20.29	3.01
KRG96663	Soybean	nucleus	27.54	3.0
KRG90443	Soybean	nucleus	30.43	2.91
KRG96615	Soybean	nucleus	21.74	2.9
KRH05051	Soybean	nucleus	5.8	1.0

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02003972	EnsemblPlantsGene:GLYMA_06G251200	GO:GO:0001046	GO:GO:0001228
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006366
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:K7KX93	EnsemblPlants:KRH55381	ProteinID:KRH55381
ProteinID:KRH55381.1	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF15	SUPFAM:SSF47459	UniParc:UPI0002967D33
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:42581147..42581486

Molecular Weight (calculated)

8118.9 Da

IEP (calculated)

10.706

GRAVY (calculated)

-0.545

Length

69 amino acids

Sequence
(BLAST)

1: MPTTVPTAPH PPAVRPRVRA RRGQTTDPHS IAERLHRERI AERIRALQEL VPSVNKVFEF LDMTFYYYM

Best Arabidopsis Sequence Match ( AT2G24260.2 )
(BLAST)

001: MNQQGQTQTQ TQPQASASTA TGGTVAAPPQ SRTKIRARRG QATDPHSIAE RLRRERIAER MKALQELVPN GNKTDKASML DEIIDYVKFL QLQVKVLSMS
101: RLGGAASVSS QISEAGGSHG NASSAMVGGS QTAGNSNDSV TMTEHQVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAIST ATCHSRNPLI PGAVADVGGP
201: SPPNLSGMTI QSTSTKMGSG NGKLNGNGVT ERSSSIAVKE AVSVSKA

Arabidopsis Description

BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.