CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 7
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

extracellular: 19772575
nucleus: 21132161
extracellular: 21246215
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 21246215 doi

HB Krishnan, SS Natarajan, JO Bennett, RC Sicher

Plant Genetics Research Unit, Agricultural Research Service, USDA, 205 Curtis Hall, Columbia, MO 65211, USA. hari.krishnan@ars.usda.gov

msms PMID: 19772575 doi

S Subramanian, UH Cho, C Keyes, O Yu

Donald Danforth Plant Science Center, St Louis, MO, 63132, USA. Senthil.Subramanian@sdstate.edu

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018204	Potato	vacuole	64.91	65.29
Solyc07g062270.2.1	Tomato	vacuole	64.91	65.29
AT1G78680.1	Thale cress	extracellular	66.08	65.13
PGSC0003DMT400054757	Potato	cytosol	61.4	64.42
CDY14595	Canola	plasma membrane	64.33	63.95
Bra008376.1-P	Field mustard	plasma membrane	64.04	63.66
CDY26875	Canola	plasma membrane	64.04	63.66
OQU78307	Sorghum	cytosol	32.75	63.28
CDX87443	Canola	extracellular	54.39	63.27
CDX88464	Canola	extracellular, plasma membrane, vacuole	63.16	62.79
Bra035058.1-P	Field mustard	extracellular, golgi, vacuole	63.16	62.79
CDX87442	Canola	endoplasmic reticulum, extracellular, plasma membrane	62.87	62.5
AT1G78660.1	Thale cress	peroxisome	63.45	62.36
Solyc10g007410.2.1	Tomato	plasma membrane	61.99	61.63
Bra035056.1-P	Field mustard	extracellular	61.4	61.22
GSMUA_Achr6P31760_001	Banana	plasma membrane	64.33	61.11
VIT_19s0014g00980.t01	Wine grape	plastid	68.42	60.94
EES19816	Sorghum	endoplasmic reticulum, extracellular	60.82	60.82
Os05t0517500-01	Rice	plasma membrane	59.06	59.94
PGSC0003DMT400086403	Potato	endoplasmic reticulum, plasma membrane	58.48	59.7
AT1G78670.1	Thale cress	extracellular	60.82	59.09
CDX88462	Canola	cytosol	13.45	58.97
Solyc07g062280.2.1	Tomato	extracellular, plasma membrane	57.89	58.75
TraesCS1D01G340500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	57.02	58.21
Zm00001d010744_P001	Maize	extracellular	58.19	58.19
TraesCS1B01G350700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	57.02	57.86
KRH21930	Soybean	cytosol	29.53	57.71
TraesCS1A01G338300.1	Wheat	golgi	56.43	57.44
KRH21929	Soybean	extracellular	23.39	56.74
HORVU1Hr1G076470.14	Barley	endoplasmic reticulum, plasma membrane	56.73	56.07
Zm00001d028402_P001	Maize	mitochondrion	9.36	52.46
EES18511	Sorghum	plasma membrane	46.49	44.54
CDX88465	Canola	mitochondrion	14.33	17.13

Protein Annotations

KEGG:00790+3.4.19.9	EntrezGene:100796947	Gene3D:3.40.50.880	MapMan:50.3.4	EMBL:ACUP02008372	InterPro:Class_I_gatase-like
EnsemblPlantsGene:GLYMA_13G268000	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615
GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008242	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0030312	GO:GO:0034722	GO:GO:0046900	UniProt:I1M2Y6	InterPro:IPR015527	InterPro:IPR029062
EnsemblPlants:KRH21931	ProteinID:KRH21931	ProteinID:KRH21931.1	PFAM:PF07722	PFscan:PS51275	PANTHER:PTHR11315
PANTHER:PTHR11315:SF0	MetaCyc:PWY-2161B	MetaCyc:PWY-4061	MetaCyc:PWY-6842	MetaCyc:PWY-7112	InterPro:Pept_C26_g-glut_hydrolase
InterPro:Peptidase_C26	SUPFAM:SSF52317	SignalP:SignalP-noTM	UniParc:UPI000233B699	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:+:37052471..37057810

Molecular Weight (calculated)

37875.0 Da

IEP (calculated)

5.629

GRAVY (calculated)

-0.094

Length

342 amino acids

Sequence
(BLAST)

001: MSSDAVWVLF HLAFFSQCLP SAWAHSAILL PGQLARDSPQ SCPAPDPNLY YKPVIGIVSH PGDGASGRLS NATGASYIAA SYVKFVEAAG ARVVPLIYTE
101: PPEKLLKKLE LVNGVLFTGG WAKSGLYFET VTKIFKKILE KNDAGDHFPL FATCLGFELI TMIISQDNNI LEEFSASNQA STLQFVENAN IGESVFQRFP
201: PELLGKMSTD CLVMQNHRYG ISPGKLLNNP KLSSFFEILT TCTDEDDKVY VSTVRSQNYP VTGFQWHPEK NAFEWGSPRI PHTEDAIQIT QYVANFLVSE
301: ARKSLNRPVA QELLDNLIYN YSPTYCGKAG KGYDEVYIFA QA

Best Arabidopsis Sequence Match ( AT1G78680.1 )
(BLAST)

001: MWSYVWLPLV ALSLFKDSII MAKAATILLP SQTGFDISRS PVCSAPDPNL NYRPVIGILS HPGDGASGRL SNATDASSIA ASYVKLAESG GARVIPLIFN
101: EPEEILFQKL ELVNGVILTG GWAKEGLYFE IVKKIFNKVL ERNDAGEHFP IYAICLGFEL LTMIISQNRD IFEKMDARNS ASSLQFVENV NIQGTIFQRF
201: PPELLKKLGT DCLVMQNHRF GISPQSFEGN IALSNFFKIV TTCVDDNGKV YVSTVQSTKY PVTGFQWHPE KNAFEWGSSK IPHSEDAIQV TQHAANHLVS
301: EARKSLNRPE SKKVLSNLIY NYKPTYCGYA GIGYDEVYIF TQQRSLL

Arabidopsis Description

GGH2Gamma-glutamyl hydrolase 2 [Source:UniProtKB/Swiss-Prot;Acc:O65355]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.