CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028402_P001	Maize	mitochondrion	29.49	37.7
KRH21930	Soybean	cytosol	47.44	21.14
CDX87443	Canola	extracellular	79.49	21.09
OQU78307	Sorghum	cytosol	47.44	20.9
AT1G78670.1	Thale cress	extracellular	82.05	18.18
CDY14595	Canola	plasma membrane	71.79	16.28
CDY26875	Canola	plasma membrane	71.79	16.28
CDX87442	Canola	endoplasmic reticulum, extracellular, plasma membrane	69.23	15.7
CDX88464	Canola	extracellular, plasma membrane, vacuole	67.95	15.41
Solyc07g062280.2.1	Tomato	extracellular, plasma membrane	61.54	14.24
PGSC0003DMT400086403	Potato	endoplasmic reticulum, plasma membrane	60.26	14.03
PGSC0003DMT400018204	Potato	vacuole	60.26	13.82
PGSC0003DMT400054757	Potato	cytosol	57.69	13.8
GSMUA_Achr6P31760_001	Banana	plasma membrane	62.82	13.61
KRH21931	Soybean	extracellular	58.97	13.45
Solyc07g062270.2.1	Tomato	vacuole	57.69	13.24
Solyc10g007410.2.1	Tomato	plasma membrane	56.41	12.79
VIT_19s0014g00980.t01	Wine grape	plastid	61.54	12.5
EES19816	Sorghum	endoplasmic reticulum, extracellular	53.85	12.28
Zm00001d010744_P001	Maize	extracellular	52.56	11.99
Os05t0517500-01	Rice	plasma membrane	51.28	11.87
TraesCS1B01G350700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	51.28	11.87
TraesCS1D01G340500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	50.0	11.64
TraesCS1A01G338300.1	Wheat	golgi	48.72	11.31
HORVU1Hr1G076470.14	Barley	endoplasmic reticulum, plasma membrane	48.72	10.98
EES18511	Sorghum	plasma membrane	46.15	10.08
CDX88465	Canola	mitochondrion	17.95	4.9
KRH21929	Soybean	extracellular	1.28	0.71

Protein Annotations

EnsemblPlants:CDX88462	EnsemblPlantsGene:GSBRNA2T00148008001	Gene3D:3.40.50.880	GO:A0A078DHM7	GO:GO:0003674	GO:GO:0003824
GO:GO:0008242	GO:GO:0016787	InterPro:Class_I_gatase-like	InterPro:IPR015527	InterPro:IPR029062	InterPro:Pept_C26_g-glut_hydrolase
KEGG:00790+3.4.19.9	MetaCyc:PWY-2161B	MetaCyc:PWY-4061	MetaCyc:PWY-6842	MetaCyc:PWY-7112	PANTHER:PTHR11315
PANTHER:PTHR11315:SF0	ProteinID:CDX88462	ProteinID:CDX88462.1	UniParc:UPI0004EDD7E6	MapMan:50.3.4	:

Description

BnaC06g39060D

Coordinates

chrLK031855:+:1136469..1137020

Molecular Weight (calculated)

8672.1 Da

IEP (calculated)

6.516

GRAVY (calculated)

-0.505

Length

78 amino acids

Sequence
(BLAST)

1: MAPIMELGAK IQWGSSEIPH SEDAIQVTQH AANYLVSEAR KSLNRPSSEK VLSNLIYNYK TTYSGYKGSG NDEAYIFT

Best Arabidopsis Sequence Match ( AT1G78670.1 )
(BLAST)

001: MWRFCFFLSL LFFDVSAVKS AESIFLPSQI GVEDSRVFES LSLSPVCSAA DPNLNYKPVI GILTHPGEGR WDARLHSLKN YAYATNISYI AASYVKLAET
101: GGARVIPLIY NEPEEILFQK LELVNGVIFT GGWAKTGLYY DVVEKIFNKV MEKNDAGEHF PVYAMCLGFE ILSMIISQNR DILERFNSVN YASSLQFFKN
201: VNIEATVFQR FPPELLKKLS ADCLVMQNHY FGISPDNFQG NPYLSSFFNI VTTSADKDSK TFVSTIRSKR YPVTAFQWHP EKNAFEWGSS EIPHSEDAIQ
301: VTQHAANYLV SEARKSMNRP SSEKVLSNLI YNYKPTYSGY KGSGDDEVYI FT

Arabidopsis Description

GGH3Probable gamma-glutamyl hydrolase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZV85]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.