Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G45620.1 | KRH23958 | AT4G25200.1 | 21798944 |
| AT5G45620.1 | KRH39841 | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH74300 | Soybean | cytosol | 97.41 | 97.41 |
| VIT_02s0012g02660.t01 | Wine grape | cytosol | 90.93 | 90.93 |
| PGSC0003DMT400062813 | Potato | cytosol | 88.08 | 88.08 |
| Solyc09g090720.2.1 | Tomato | cytosol, nucleus | 86.79 | 86.79 |
| Solyc05g053140.2.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 86.01 | 86.01 |
| PGSC0003DMT400069954 | Potato | cytosol | 86.01 | 86.01 |
| AT5G45620.1 | Thale cress | cytosol | 84.2 | 84.2 |
| Bra020980.1-P | Field mustard | cytosol | 83.42 | 83.42 |
| CDX76502 | Canola | cytosol | 83.42 | 83.42 |
| Bra025066.1-P | Field mustard | cytosol | 83.42 | 83.42 |
| CDY39438 | Canola | cytosol | 83.16 | 83.16 |
| CDY69078 | Canola | cytosol | 82.9 | 82.9 |
| CDY69914 | Canola | cytosol, extracellular | 82.64 | 82.64 |
| GSMUA_Achr2P09740_001 | Banana | cytoskeleton, cytosol, peroxisome | 82.38 | 82.17 |
| GSMUA_Achr5P03630_001 | Banana | cytosol | 82.12 | 81.91 |
| GSMUA_Achr7P06760_001 | Banana | cytosol, nucleus, plastid | 41.71 | 80.5 |
| Zm00001d014436_P001 | Maize | cytosol | 78.24 | 78.44 |
| Os03t0214600-01 | Rice | cytosol | 77.2 | 77.4 |
| Os01t0511300-01 | Rice | cytosol, plasma membrane | 76.68 | 76.88 |
| HORVU2Hr1G102810.3 | Barley | cytosol | 74.35 | 74.16 |
| AT4G19006.2 | Thale cress | cytosol | 83.94 | 73.8 |
| CDX99654 | Canola | cytosol, mitochondrion, nucleus | 20.21 | 73.58 |
| TraesCS1A01G196300.1 | Wheat | cytosol, golgi | 71.5 | 71.69 |
| TraesCS1B01G210900.1 | Wheat | cytosol, golgi | 71.5 | 71.69 |
| TraesCS1D01G199700.1 | Wheat | cytosol | 71.5 | 71.69 |
| Zm00001d030126_P002 | Maize | endoplasmic reticulum, golgi, vacuole | 79.02 | 69.16 |
| Zm00001d002455_P001 | Maize | cytosol, golgi | 59.33 | 68.56 |
| HORVU1Hr1G051120.1 | Barley | cytosol | 42.23 | 67.63 |
| HORVU2Hr1G034690.3 | Barley | mitochondrion | 71.76 | 65.48 |
| TraesCS1B01G327800.1 | Wheat | mitochondrion | 34.46 | 56.6 |
| OQU82238 | Sorghum | extracellular | 19.43 | 44.64 |
Protein Annotations
| Gene3D:1.25.40.570 | EntrezGene:100804455 | MapMan:19.2.6.2.2.8 | EMBL:ACUP02005947 | EMBL:BT097860 | UniProt:C6TJL2 |
| EnsemblPlantsGene:GLYMA_09G210000 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008541 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0043248 |
| InterPro:IPR000717 | EnsemblPlants:KRH39622 | ProteinID:KRH39622 | ProteinID:KRH39622.1 | InterPro:PCI_dom | PFAM:PF01399 |
| PFscan:PS50250 | InterPro:PSMD13 | PANTHER:PTHR10539 | PANTHER:PTHR10539:SF2 | SMART:SM00088 | SMART:SM00753 |
| SUPFAM:SSF46785 | UniParc:UPI0001B16733 | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr9:-:43422891..43427937
Molecular Weight (calculated)
44123.3 Da
IEP (calculated)
5.433
GRAVY (calculated)
-0.028
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALQYLESL RNSHPELSDW YNSLADLYQK KLWHQLTLKL EQFVALAVFQ AGDALIQLYH NFITDFETKI NLLKLAHFAV IVSRQYSEKE AAVGYLGGVI
101: QKLQDTREQR IEEPILYIKM QIAIFKLEQG DQKECKKLLE DGKSTLDSMT DIDPSVYASY YWVSSQFHKT CQEFAEFYKS ALLYLAYTSV ESLSDSFKLD
201: LAFDLSLSAL LGDNIYNFGE LLAHPIIKSL LGTKVEWLYY ILQAFNSGDL VRYQELCRVH NAALRAQPAL VQNEQKLLEK INILCLMEII FSRPSEDRTI
301: PLSVIAERTK LSIENVEHLL MKSLSVHLIE GIIDQVEGTV HVSWVQPRVL GIQQIKSLRD RLDSWTGKVH TALLSIEAET PDLIGS
101: QKLQDTREQR IEEPILYIKM QIAIFKLEQG DQKECKKLLE DGKSTLDSMT DIDPSVYASY YWVSSQFHKT CQEFAEFYKS ALLYLAYTSV ESLSDSFKLD
201: LAFDLSLSAL LGDNIYNFGE LLAHPIIKSL LGTKVEWLYY ILQAFNSGDL VRYQELCRVH NAALRAQPAL VQNEQKLLEK INILCLMEII FSRPSEDRTI
301: PLSVIAERTK LSIENVEHLL MKSLSVHLIE GIIDQVEGTV HVSWVQPRVL GIQQIKSLRD RLDSWTGKVH TALLSIEAET PDLIGS
001: MAALQYLESL KNTHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALAVFQ AGDALIQFYH NFITDFETKI NLLKLAHFAV VVSRQYSEKE AAVSYLESVI
101: EKLRATKEPR ITEPIIYIET QKALFKLEQG DQKECKKILD DGKSSLDSMT DIDPSVYANF YWVSSQYHKC RQEFSDFYKS ALLYLAYTSV EDLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLIAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSIIAERTK LSIEDVEHLL MKSLSVHLIE GIIDQVNGTI YVSWAQPRVL GIPQIKALRD QLDSWVDKVH TTLLSVEAET PDLVAA
101: EKLRATKEPR ITEPIIYIET QKALFKLEQG DQKECKKILD DGKSSLDSMT DIDPSVYANF YWVSSQYHKC RQEFSDFYKS ALLYLAYTSV EDLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLIAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSIIAERTK LSIEDVEHLL MKSLSVHLIE GIIDQVNGTI YVSWAQPRVL GIPQIKALRD QLDSWVDKVH TTLLSVEAET PDLVAA
Arabidopsis Description
RPN9A26S proteasome non-ATPase regulatory subunit 13 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q8RWF0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.