Factsheet for HORVU2Hr1G034690.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU6Hr1G077710.3
HORVU7Hr1G036470.3
HORVU7Hr1G036500.7
HORVU7Hr1G036540.3
HORVU7Hr1G036570.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45620.1	HORVU6Hr1G077710.3	AT4G25200.1	21798944
AT5G45620.1	HORVU7Hr1G036470.3	AT4G25200.1	21798944
AT5G45620.1	HORVU7Hr1G036500.7	AT4G25200.1	21798944
AT5G45620.1	HORVU7Hr1G036540.3	AT4G25200.1	21798944
AT5G45620.1	HORVU7Hr1G036570.2	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G210900.1	Wheat	cytosol, golgi	90.07	98.96
TraesCS1A01G196300.1	Wheat	cytosol, golgi	90.07	98.96
TraesCS1D01G199700.1	Wheat	cytosol	89.6	98.44
HORVU1Hr1G051120.1	Barley	cytosol	53.43	93.78
KXG38813	Sorghum	cytosol	78.96	86.75
Zm00001d014436_P001	Maize	cytosol	78.49	86.23
Os01t0511300-01	Rice	cytosol, plasma membrane	78.01	85.71
Os03t0214600-01	Rice	cytosol	77.78	85.45
Zm00001d030126_P002	Maize	endoplasmic reticulum, golgi, vacuole	79.2	75.96
VIT_02s0012g02660.t01	Wine grape	cytosol	66.19	72.54
GSMUA_Achr5P03630_001	Banana	cytosol	66.19	72.35
GSMUA_Achr2P09740_001	Banana	cytoskeleton, cytosol, peroxisome	65.72	71.83
KRH39622	Soybean	cytosol	65.48	71.76
KRH74300	Soybean	cytosol	65.48	71.76
Solyc05g053140.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	65.25	71.5
PGSC0003DMT400069954	Potato	cytosol	64.54	70.73
PGSC0003DMT400062813	Potato	cytosol	64.3	70.47
HORVU2Hr1G102810.3	Barley	cytosol	63.83	69.77
Solyc09g090720.2.1	Tomato	cytosol, nucleus	63.59	69.69
CDY69914	Canola	cytosol, extracellular	62.17	68.13
CDX76502	Canola	cytosol	62.17	68.13
Bra020980.1-P	Field mustard	cytosol	62.17	68.13
GSMUA_Achr7P06760_001	Banana	cytosol, nucleus, plastid	31.91	67.5
AT5G45620.1	Thale cress	cytosol	59.81	65.54
CDY69078	Canola	cytosol	59.34	65.03
Bra025066.1-P	Field mustard	cytosol	59.34	65.03
CDY39438	Canola	cytosol	59.1	64.77
AT4G19006.2	Thale cress	cytosol	62.17	59.91
CDX99654	Canola	cytosol, mitochondrion, nucleus	13.24	52.83

Protein Annotations

EnsemblPlants:HORVU2Hr1G034690.3	EnsemblPlantsGene:HORVU2Hr1G034690	Gene3D:1.25.40.570	InterPro:IPR000717	InterPro:PCI_dom	InterPro:PSMD13
InterPro:WH_DNA-bd_sf	PANTHER:PTHR10539	PANTHER:PTHR10539:SF2	PFAM:PF01399	PFscan:PS50250	SEG:seg
SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI000B47A458	UniProt:A0A287HP75	MapMan:19.2.6.2.2.8

Description

No Description!

Coordinates

chrchr2H:+:143486799..143491092

Molecular Weight (calculated)

47624.6 Da

IEP (calculated)

6.576

GRAVY (calculated)

-0.005

Length

423 amino acids

Sequence
(BLAST)

001: PSGSASSTRT RRLISIRVPS VPRQVSVARF RFHPSPSSMA LQYVEAQRQA RPDLADWYAD LADLYQRKLW HQLTLKLDQF LQIPAAQTGD TLIQLYNNFI
101: SDFETKINLL KLAQFAVIAS RQYPDKDAAI AFLEGIITKL RETRELRINE PILHVKMQIA AIHLDKGNHK ECKNLLEEGK TTLDGMTDVD PTVHASFYWI
201: SSQYHKSLQE FAEFYKNALL YLAYTTVGSL SDSFKLDLAF DLSLAALLGD NIYNFGELLA HPIIISLIGT KVEWVYHMLQ AFNTGNLALY QELCGVHNAA
301: LSAQPALVQN EQKLLEKINI LCLMEIIFSR PSEDRTIPLS VIAKQTKLST SEVECLLMKS LSVHLIEGII DEVDSTVHVS WVQPRVLGIP QVKALRERLD
401: SWVGKVHSTL LSIEAETPDL VAA

Best Arabidopsis Sequence Match ( AT4G19006.1 )
(BLAST)

001: MAALQYLESQ KNAHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALSVFQ AGDALIQLYN NFITDFETRI NLLKLAHFAV VVSRQYPEKE AAVSYLEGVI
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA

Arabidopsis Description

Proteasome component (PCI) domain protein [Source:TAIR;Acc:AT4G19006]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.