Factsheet for HORVU2Hr1G102810.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU6Hr1G077710.3
HORVU7Hr1G036470.3
HORVU7Hr1G036500.7
HORVU7Hr1G036540.3
HORVU7Hr1G036570.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45620.1	HORVU6Hr1G077710.3	AT4G25200.1	21798944
AT5G45620.1	HORVU7Hr1G036470.3	AT4G25200.1	21798944
AT5G45620.1	HORVU7Hr1G036500.7	AT4G25200.1	21798944
AT5G45620.1	HORVU7Hr1G036540.3	AT4G25200.1	21798944
AT5G45620.1	HORVU7Hr1G036570.2	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002455_P001	Maize	cytosol, golgi	67.18	77.84
VIT_02s0012g02660.t01	Wine grape	cytosol	76.49	76.68
GSMUA_Achr5P03630_001	Banana	cytosol	75.71	75.71
GSMUA_Achr7P06760_001	Banana	cytosol, nucleus, plastid	38.76	75.0
PGSC0003DMT400062813	Potato	cytosol	74.42	74.61
KRH39622	Soybean	cytosol	74.16	74.35
Solyc09g090720.2.1	Tomato	cytosol, nucleus	74.16	74.35
CDX76502	Canola	cytosol	73.64	73.83
Bra020980.1-P	Field mustard	cytosol	73.64	73.83
Solyc05g053140.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	73.64	73.83
GSMUA_Achr2P09740_001	Banana	cytoskeleton, cytosol, peroxisome	73.64	73.64
CDY69914	Canola	cytosol, extracellular	73.39	73.58
PGSC0003DMT400069954	Potato	cytosol	73.39	73.58
KRH74300	Soybean	cytosol	72.87	73.06
AT5G45620.1	Thale cress	cytosol	71.83	72.02
TraesCS1B01G327800.1	Wheat	mitochondrion	43.67	71.91
CDY39438	Canola	cytosol	71.58	71.76
Bra025066.1-P	Field mustard	cytosol	71.32	71.5
CDY69078	Canola	cytosol	70.8	70.98
CDX99654	Canola	cytosol, mitochondrion, nucleus	19.12	69.81
HORVU1Hr1G051120.1	Barley	cytosol	41.86	67.22
AT4G19006.2	Thale cress	cytosol	73.13	64.46
HORVU2Hr1G034690.3	Barley	mitochondrion	69.77	63.83

Protein Annotations

EMBL:AK354414	EMBL:AK363141	EnsemblPlants:HORVU2Hr1G102810.3	EnsemblPlantsGene:HORVU2Hr1G102810	Gene3D:1.25.40.570	InterPro:IPR000717
InterPro:PCI_dom	InterPro:PSMD13	InterPro:WH_DNA-bd_sf	PANTHER:PTHR10539	PANTHER:PTHR10539:SF2	PFAM:PF01399
PFscan:PS50250	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0002004569	UniProt:F2CS12
MapMan:19.2.6.2.2.8	:	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CS12]

Coordinates

chrchr2H:-:698231394..698234766

Molecular Weight (calculated)

43637.3 Da

IEP (calculated)

4.953

GRAVY (calculated)

0.004

Length

387 amino acids

Sequence
(BLAST)

001: MAAPLEFLEA QGSTRPELAE WYAALADLYQ RKLWHQLTLK LDQFLALAVV QAGDALIQLY THFISDFESK INLLKFAHFA VVVSRQYSDK DAGISYLEGV
101: ISKLHDTKES RIEEPVLYVK MQIASFLLEK GNQKECKKLV DEGKTTLDSM DDVDPSVHST YYWLCSQYHK VCQDYSEFYK NALLYLAYTT VESLSEPFKQ
201: NLAFDLSLAA LLGDNIYNFG ELLAHPIIHS LVGTSVEWIY HILQAFNSGN LASYQELCKV HATALSAQPA LVQKERELLE KINVLCLMEI IFSRASQDRT
301: IPLSTIAEQT RLSVEDVEYL LMKSLSAHLI EGIIDGVDGT VHVSWAQPRV LGIDQVKSLR DRLDTWVGKV HTTLLSVEAE TPDLVAS

Best Arabidopsis Sequence Match ( AT4G19006.1 )
(BLAST)

001: MAALQYLESQ KNAHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALSVFQ AGDALIQLYN NFITDFETRI NLLKLAHFAV VVSRQYPEKE AAVSYLEGVI
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA

Arabidopsis Description

Proteasome component (PCI) domain protein [Source:TAIR;Acc:AT4G19006]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.