Factsheet for Solyc09g090720.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g078700.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45620.1	Solyc08g078700.2.1	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062813	Potato	cytosol	98.19	98.19
Solyc05g053140.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	88.34	88.34
VIT_02s0012g02660.t01	Wine grape	cytosol	88.08	88.08
KRH39622	Soybean	cytosol	86.79	86.79
KRH74300	Soybean	cytosol	85.75	85.75
AT5G45620.1	Thale cress	cytosol	81.61	81.61
GSMUA_Achr7P06760_001	Banana	cytosol, nucleus, plastid	41.97	81.0
GSMUA_Achr2P09740_001	Banana	cytoskeleton, cytosol, peroxisome	81.09	80.88
CDY39438	Canola	cytosol	80.83	80.83
GSMUA_Achr5P03630_001	Banana	cytosol	80.83	80.62
Bra025066.1-P	Field mustard	cytosol	80.57	80.57
Bra020980.1-P	Field mustard	cytosol	80.31	80.31
CDX76502	Canola	cytosol	80.31	80.31
CDY69078	Canola	cytosol	80.05	80.05
CDY69914	Canola	cytosol, extracellular	80.05	80.05
Os03t0214600-01	Rice	cytosol	76.94	77.14
Zm00001d014436_P001	Maize	cytosol	76.17	76.36
Os01t0511300-01	Rice	cytosol, plasma membrane	75.65	75.84
CDX99654	Canola	cytosol, mitochondrion, nucleus	20.73	75.47
HORVU2Hr1G102810.3	Barley	cytosol	74.35	74.16
AT4G19006.2	Thale cress	cytosol	81.87	71.98
TraesCS1B01G210900.1	Wheat	cytosol, golgi	69.95	70.13
TraesCS1D01G199700.1	Wheat	cytosol	69.95	70.13
TraesCS1A01G196300.1	Wheat	cytosol, golgi	69.69	69.87
Zm00001d002455_P001	Maize	cytosol, golgi	59.33	68.56
Zm00001d030126_P002	Maize	endoplasmic reticulum, golgi, vacuole	76.68	67.12
HORVU1Hr1G051120.1	Barley	cytosol	41.45	66.39
HORVU2Hr1G034690.3	Barley	mitochondrion	69.69	63.59
TraesCS1B01G327800.1	Wheat	mitochondrion	33.68	55.32
OQU82238	Sorghum	extracellular	20.98	48.21

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.8	GO:GO:0003674	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0008541	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0043248	InterPro:IPR000717	UniProt:K4CW98	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250
InterPro:PSMD13	PANTHER:PTHR10539	PANTHER:PTHR10539:SF2	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
EnsemblPlantsGene:Solyc09g090720.2	EnsemblPlants:Solyc09g090720.2.1	UniParc:UPI000276AF9F	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

No Description!

Coordinates

chr9:-:70152739..70158082

Molecular Weight (calculated)

44132.1 Da

IEP (calculated)

4.981

GRAVY (calculated)

-0.046

Length

386 amino acids

Sequence
(BLAST)

001: MAALQYLESL RNDHPELSDW YTTLADLYQR KLWHQLSLKL EQFVALAVFQ AGDTLIQLYH NFITDFETKI NLLKLAHFAV IVSRQYSEKD AGIGYLEGVA
101: EKLQNTKETR IEEPILYIKL QIALFKLEQG DQKECKRLLE QGNATIDSMT DVDPSVYASY YWVSSQYHKT RQEFAEFYKS ALLYLAYVSV DSLSESFKLD
201: LAFDLSLSAL LGDNVYNFGE LLAHPIIKSL VGTQVEWLYH ILEAFNTGDL VRYQELCRVH KAALSAQPAL LQNEKKLLEK INILCLMEII FSRPAEDRTI
301: PLSAIAERTK LSVEDVEYLL MKSLSVHLIE GIIDQVEGTV HVSWVQPRVL GVPQIKSLRD RLDNWVDKVH TALLSVEAET PDLVSS

Best Arabidopsis Sequence Match ( AT4G19006.1 )
(BLAST)

001: MAALQYLESQ KNAHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALSVFQ AGDALIQLYN NFITDFETRI NLLKLAHFAV VVSRQYPEKE AAVSYLEGVI
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA

Arabidopsis Description

Proteasome component (PCI) domain protein [Source:TAIR;Acc:AT4G19006]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.