CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
golgi 4
plasma membrane 4
endoplasmic reticulum 4
vacuole 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89430
EER89431
KXG19616
OQU75612
OQU75930
OQU76071
OQU85385

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45620.1	EER89430	AT4G25200.1	21798944
AT5G45620.1	EER89431	AT4G25200.1	21798944
AT5G45620.1	KXG19616	AT4G25200.1	21798944
AT5G45620.1	OQU75612	AT4G25200.1	21798944
AT5G45620.1	OQU75930	AT4G25200.1	21798944
AT5G45620.1	OQU76071	AT4G25200.1	21798944
AT5G45620.1	OQU85385	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99654	Canola	cytosol, mitochondrion, nucleus	32.14	50.94
VIT_02s0012g02660.t01	Wine grape	cytosol	48.81	21.24
PGSC0003DMT400062813	Potato	cytosol	48.81	21.24
Solyc09g090720.2.1	Tomato	cytosol, nucleus	48.21	20.98
Solyc05g053140.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	47.62	20.73
KXG38813	Sorghum	cytosol	47.02	20.52
PGSC0003DMT400069954	Potato	cytosol	47.02	20.47
CDY69914	Canola	cytosol, extracellular	46.43	20.21
CDX76502	Canola	cytosol	46.43	20.21
Bra020980.1-P	Field mustard	cytosol	46.43	20.21
KRH39622	Soybean	cytosol	44.64	19.43
KRH74300	Soybean	cytosol	44.64	19.43
CDY69078	Canola	cytosol	43.45	18.91
CDY39438	Canola	cytosol	43.45	18.91
Bra025066.1-P	Field mustard	cytosol	43.45	18.91
AT5G45620.1	Thale cress	cytosol	42.86	18.65
AT4G19006.2	Thale cress	cytosol	44.64	17.08

Protein Annotations

EnsemblPlants:OQU82238	EnsemblPlantsGene:SORBI_3006G200650	Gene3D:1.25.40.570	InterPro:IPR000717	InterPro:PCI_dom	InterPro:PSMD13
InterPro:WH_DNA-bd_sf	PANTHER:PTHR10539	PANTHER:PTHR10539:SF2	PFAM:PF01399	ProteinID:OQU82238	ProteinID:OQU82238.1
SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF46785	UniParc:UPI000B8BAFBD	UniProt:A0A1Z5RER9	MapMan:35.1

Description

hypothetical protein

Coordinates

chr6:+:55209492..55210675

Molecular Weight (calculated)

18705.1 Da

IEP (calculated)

6.886

GRAVY (calculated)

0.257

Length

168 amino acids

Sequence
(BLAST)

001: MPLTCRRCLY LLQATIVAYA TSCSSSLPVL LPPSAHCLRL HSWCIFFLGE PATSLHQACL SPLPPPVVPS SSNMVLDMEK KKESIKTIAE QTRLSVEDVE
101: YLLMKCLFAR LIEGIIDQVD GVVHVSWVQQ RVLGIEVKSL RDRLDMPVRW SDTTLLAVEA KTPDLVSS

Best Arabidopsis Sequence Match ( AT4G19006.1 )
(BLAST)

001: MAALQYLESQ KNAHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALSVFQ AGDALIQLYN NFITDFETRI NLLKLAHFAV VVSRQYPEKE AAVSYLEGVI
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA

Arabidopsis Description

Proteasome component (PCI) domain protein [Source:TAIR;Acc:AT4G19006]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.