Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_16s0022g00510.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G45620.1 | VIT_16s0022g00510.t01 | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH39622 | Soybean | cytosol | 90.93 | 90.93 |
| KRH74300 | Soybean | cytosol | 89.9 | 89.9 |
| PGSC0003DMT400062813 | Potato | cytosol | 88.86 | 88.86 |
| Solyc09g090720.2.1 | Tomato | cytosol, nucleus | 88.08 | 88.08 |
| Solyc05g053140.2.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 87.82 | 87.82 |
| PGSC0003DMT400069954 | Potato | cytosol | 87.82 | 87.82 |
| AT5G45620.1 | Thale cress | cytosol | 85.49 | 85.49 |
| GSMUA_Achr5P03630_001 | Banana | cytosol | 85.49 | 85.27 |
| GSMUA_Achr2P09740_001 | Banana | cytoskeleton, cytosol, peroxisome | 85.23 | 85.01 |
| Bra020980.1-P | Field mustard | cytosol | 84.2 | 84.2 |
| CDX76502 | Canola | cytosol | 84.2 | 84.2 |
| CDY69914 | Canola | cytosol, extracellular | 83.94 | 83.94 |
| CDY39438 | Canola | cytosol | 83.94 | 83.94 |
| Bra025066.1-P | Field mustard | cytosol | 83.68 | 83.68 |
| CDY69078 | Canola | cytosol | 83.16 | 83.16 |
| GSMUA_Achr7P06760_001 | Banana | cytosol, nucleus, plastid | 42.75 | 82.5 |
| Os03t0214600-01 | Rice | cytosol | 80.31 | 80.52 |
| Zm00001d014436_P001 | Maize | cytosol | 80.05 | 80.26 |
| Os01t0511300-01 | Rice | cytosol, plasma membrane | 79.02 | 79.22 |
| HORVU2Hr1G102810.3 | Barley | cytosol | 76.68 | 76.49 |
| CDX99654 | Canola | cytosol, mitochondrion, nucleus | 20.98 | 76.42 |
| AT4G19006.2 | Thale cress | cytosol | 85.23 | 74.94 |
| TraesCS1B01G210900.1 | Wheat | cytosol, golgi | 72.8 | 72.99 |
| TraesCS1D01G199700.1 | Wheat | cytosol | 72.8 | 72.99 |
| TraesCS1A01G196300.1 | Wheat | cytosol, golgi | 72.54 | 72.73 |
| Zm00001d002455_P001 | Maize | cytosol, golgi | 61.14 | 70.66 |
| Zm00001d030126_P002 | Maize | endoplasmic reticulum, golgi, vacuole | 80.05 | 70.07 |
| HORVU1Hr1G051120.1 | Barley | cytosol | 43.52 | 69.71 |
| HORVU2Hr1G034690.3 | Barley | mitochondrion | 72.54 | 66.19 |
| TraesCS1B01G327800.1 | Wheat | mitochondrion | 34.72 | 57.02 |
| OQU82238 | Sorghum | extracellular | 21.24 | 48.81 |
Protein Annotations
| Gene3D:1.25.40.570 | EntrezGene:100252379 | wikigene:100252379 | MapMan:19.2.6.2.2.8 | ProteinID:CCB57827 | ProteinID:CCB57827.1 |
| UniProt:F6HT17 | EMBL:FN596247 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006511 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008541 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 |
| GO:GO:0043248 | InterPro:IPR000717 | EntrezGene:LOC100252379 | wikigene:LOC100252379 | InterPro:PCI_dom | PFAM:PF01399 |
| PFscan:PS50250 | InterPro:PSMD13 | PANTHER:PTHR10539 | PANTHER:PTHR10539:SF2 | SMART:SM00088 | SMART:SM00753 |
| SUPFAM:SSF46785 | UniParc:UPI0001982D6E | ArrayExpress:VIT_02s0012g02660 | EnsemblPlantsGene:VIT_02s0012g02660 | EnsemblPlants:VIT_02s0012g02660.t01 | unigene:Vvi.177 |
| InterPro:WH_DNA-bd_sf | RefSeq:XP_002275168 | RefSeq:XP_002275168.1 | RefSeq:XP_003631488 | RefSeq:XP_003631488.1 | SEG:seg |
Description
No Description!
Coordinates
chr2:-:10269951..10293929
Molecular Weight (calculated)
44335.6 Da
IEP (calculated)
5.191
GRAVY (calculated)
-0.008
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALQYLESL RAAHPELAEW YNSLADLYQR KLWHQLTLKL EQFVALAVFQ AGDALIQLYH NFITDFETKI NLLKLAHFAV IVSRQYTEKE AAVRYLEGVI
101: EKLRGTRELR IEEPILYIKM QIAVFNLEKG DQKECKKLLE DGKSTLDSMT DIDPSVYASY YWVSSQYYKS RQEFAEFYKS ALLYLAYTSV ESLSETFKLD
201: LAFDLSLSAL LGDNIYNFGE LLAHPIIKSL LGTKVEWLYY ILQAFNSGDL VRYQELCRVH NAALSAQPAL VQNEKKLLEK INILCLMEII FSRPSEDRTI
301: PLNIIAERTK LSVEDVEYLL MKSLSVHLIE GIIDQVEGTV HVSWVQPRVL GIPQIKSLRD RLDNWVDKVH TALLSVEAET PDLVAS
101: EKLRGTRELR IEEPILYIKM QIAVFNLEKG DQKECKKLLE DGKSTLDSMT DIDPSVYASY YWVSSQYYKS RQEFAEFYKS ALLYLAYTSV ESLSETFKLD
201: LAFDLSLSAL LGDNIYNFGE LLAHPIIKSL LGTKVEWLYY ILQAFNSGDL VRYQELCRVH NAALSAQPAL VQNEKKLLEK INILCLMEII FSRPSEDRTI
301: PLNIIAERTK LSVEDVEYLL MKSLSVHLIE GIIDQVEGTV HVSWVQPRVL GIPQIKSLRD RLDNWVDKVH TALLSVEAET PDLVAS
001: MAALQYLESL KNTHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALAVFQ AGDALIQFYH NFITDFETKI NLLKLAHFAV VVSRQYSEKE AAVSYLESVI
101: EKLRATKEPR ITEPIIYIET QKALFKLEQG DQKECKKILD DGKSSLDSMT DIDPSVYANF YWVSSQYHKC RQEFSDFYKS ALLYLAYTSV EDLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLIAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSIIAERTK LSIEDVEHLL MKSLSVHLIE GIIDQVNGTI YVSWAQPRVL GIPQIKALRD QLDSWVDKVH TTLLSVEAET PDLVAA
101: EKLRATKEPR ITEPIIYIET QKALFKLEQG DQKECKKILD DGKSSLDSMT DIDPSVYANF YWVSSQYHKC RQEFSDFYKS ALLYLAYTSV EDLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLIAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSIIAERTK LSIEDVEHLL MKSLSVHLIE GIIDQVNGTI YVSWAQPRVL GIPQIKALRD QLDSWVDKVH TTLLSVEAET PDLVAA
Arabidopsis Description
RPN9A26S proteasome non-ATPase regulatory subunit 13 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q8RWF0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.