Subcellular Localization
min:
: max
Winner_takes_all: golgi, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G199700.1 | Wheat | cytosol | 99.48 | 99.48 |
| TraesCS1A01G196300.1 | Wheat | cytosol, golgi | 99.22 | 99.22 |
| HORVU1Hr1G051120.1 | Barley | cytosol | 58.44 | 93.36 |
| HORVU2Hr1G034690.3 | Barley | mitochondrion | 98.96 | 90.07 |
| KXG38813 | Sorghum | cytosol | 87.53 | 87.53 |
| Zm00001d014436_P001 | Maize | cytosol | 87.01 | 87.01 |
| Os01t0511300-01 | Rice | cytosol, plasma membrane | 86.23 | 86.23 |
| Os03t0214600-01 | Rice | cytosol | 85.97 | 85.97 |
| Zm00001d030126_P002 | Maize | endoplasmic reticulum, golgi, vacuole | 86.75 | 75.74 |
| VIT_02s0012g02660.t01 | Wine grape | cytosol | 72.99 | 72.8 |
| GSMUA_Achr5P03630_001 | Banana | cytosol | 72.99 | 72.61 |
| GSMUA_Achr2P09740_001 | Banana | cytoskeleton, cytosol, peroxisome | 72.47 | 72.09 |
| Solyc05g053140.2.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 71.95 | 71.76 |
| KRH39622 | Soybean | cytosol | 71.69 | 71.5 |
| KRH74300 | Soybean | cytosol | 71.69 | 71.5 |
| PGSC0003DMT400069954 | Potato | cytosol | 71.17 | 70.98 |
| PGSC0003DMT400062813 | Potato | cytosol | 70.91 | 70.73 |
| Solyc09g090720.2.1 | Tomato | cytosol, nucleus | 70.13 | 69.95 |
| CDY69914 | Canola | cytosol, extracellular | 68.57 | 68.39 |
| CDX76502 | Canola | cytosol | 68.57 | 68.39 |
| Bra020980.1-P | Field mustard | cytosol | 68.57 | 68.39 |
| GSMUA_Achr7P06760_001 | Banana | cytosol, nucleus, plastid | 35.32 | 68.0 |
| AT5G45620.1 | Thale cress | cytosol | 65.97 | 65.8 |
| CDY39438 | Canola | cytosol | 65.19 | 65.03 |
| CDY69078 | Canola | cytosol | 64.94 | 64.77 |
| Bra025066.1-P | Field mustard | cytosol | 64.94 | 64.77 |
| AT4G19006.2 | Thale cress | cytosol | 68.57 | 60.14 |
| TraesCS1B01G327800.1 | Wheat | mitochondrion | 34.03 | 55.74 |
| CDX99654 | Canola | cytosol, mitochondrion, nucleus | 14.55 | 52.83 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G210900.1 | EnsemblPlantsGene:TraesCS1B01G210900 | Gene3D:1.25.40.570 | InterPro:IPR000717 | InterPro:PCI_dom | InterPro:PSMD13 |
| InterPro:WH_DNA-bd_sf | PANTHER:PTHR10539 | PANTHER:PTHR10539:SF2 | PFAM:PF01399 | PFscan:PS50250 | SEG:seg |
| SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | MapMan:19.2.6.2.2.8 | : | : |
Description
No Description!
Coordinates
chr1B:-:383800831..383803884
Molecular Weight (calculated)
43536.6 Da
IEP (calculated)
5.402
GRAVY (calculated)
0.012
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MALQYVEAQR QARPDLADWY ADLADLYQRK LWHQLTLKLD QFLQIPAAQT GDTLIQLYNN FISDFETKIN LLKLAQFAVI ASRQYPDKDA AITFLEGIIT
101: KLRETRELRI NEPILHVKMQ IAAIHLDKGN HKECKNLLEE GKTTLDGMTD VDPTVHASFY WISSQYHKSL QEFAEFYKNA LLYLAYTTVG SLSESFKLDL
201: AFDLSLAALL GDNIYNFGEL LAHPIINSLI GTKVEWVYHM LQAFNTGNLA LYQELCGVHN AALSAQPALV QNEQKLLEKI NILCLMEIIF SRPSEDRTIP
301: LSVIAKQTKL STSEVECLLM KSLSVHLIEG IIDEVDSTVH VSWVQPRVLG IPQVKALRER LDSWVGKVHT TLLSIEAETP DLVAA
101: KLRETRELRI NEPILHVKMQ IAAIHLDKGN HKECKNLLEE GKTTLDGMTD VDPTVHASFY WISSQYHKSL QEFAEFYKNA LLYLAYTTVG SLSESFKLDL
201: AFDLSLAALL GDNIYNFGEL LAHPIINSLI GTKVEWVYHM LQAFNTGNLA LYQELCGVHN AALSAQPALV QNEQKLLEKI NILCLMEIIF SRPSEDRTIP
301: LSVIAKQTKL STSEVECLLM KSLSVHLIEG IIDEVDSTVH VSWVQPRVLG IPQVKALRER LDSWVGKVHT TLLSIEAETP DLVAA
001: MAALQYLESQ KNAHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALSVFQ AGDALIQLYN NFITDFETRI NLLKLAHFAV VVSRQYPEKE AAVSYLEGVI
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA
Arabidopsis Description
Proteasome component (PCI) domain protein [Source:TAIR;Acc:AT4G19006]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.