Factsheet for Solyc05g053140.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g078700.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45620.1	Solyc08g078700.2.1	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069954	Potato	cytosol	98.19	98.19
Solyc09g090720.2.1	Tomato	cytosol, nucleus	88.34	88.34
VIT_02s0012g02660.t01	Wine grape	cytosol	87.82	87.82
KRH39622	Soybean	cytosol	86.01	86.01
KRH74300	Soybean	cytosol	85.75	85.75
Bra020980.1-P	Field mustard	cytosol	81.87	81.87
CDX76502	Canola	cytosol	81.87	81.87
CDY69914	Canola	cytosol, extracellular	81.87	81.87
AT5G45620.1	Thale cress	cytosol	81.61	81.61
CDY39438	Canola	cytosol	81.61	81.61
Bra025066.1-P	Field mustard	cytosol	81.35	81.35
CDY69078	Canola	cytosol	81.09	81.09
GSMUA_Achr2P09740_001	Banana	cytoskeleton, cytosol, peroxisome	80.83	80.62
GSMUA_Achr7P06760_001	Banana	cytosol, nucleus, plastid	41.71	80.5
GSMUA_Achr5P03630_001	Banana	cytosol	79.53	79.33
Os03t0214600-01	Rice	cytosol	78.76	78.96
Os01t0511300-01	Rice	cytosol, plasma membrane	78.24	78.44
CDX99654	Canola	cytosol, mitochondrion, nucleus	21.5	78.3
Zm00001d014436_P001	Maize	cytosol	77.72	77.92
HORVU2Hr1G102810.3	Barley	cytosol	73.83	73.64
AT4G19006.2	Thale cress	cytosol	82.64	72.67
TraesCS1B01G210900.1	Wheat	cytosol, golgi	71.76	71.95
TraesCS1D01G199700.1	Wheat	cytosol	71.76	71.95
TraesCS1A01G196300.1	Wheat	cytosol, golgi	71.5	71.69
HORVU1Hr1G051120.1	Barley	cytosol	43.01	68.88
Zm00001d030126_P002	Maize	endoplasmic reticulum, golgi, vacuole	77.98	68.25
Zm00001d002455_P001	Maize	cytosol, golgi	56.99	65.87
HORVU2Hr1G034690.3	Barley	mitochondrion	71.5	65.25
TraesCS1B01G327800.1	Wheat	mitochondrion	33.94	55.74
OQU82238	Sorghum	extracellular	20.73	47.62

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.8	GO:GO:0003674	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0008541	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0043248	InterPro:IPR000717	UniProt:K4C1Z4	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250
InterPro:PSMD13	PANTHER:PTHR10539	PANTHER:PTHR10539:SF2	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
EnsemblPlantsGene:Solyc05g053140.2	EnsemblPlants:Solyc05g053140.2.1	UniParc:UPI00027660F7	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

No Description!

Coordinates

chr5:-:63271371..63278388

Molecular Weight (calculated)

44157.4 Da

IEP (calculated)

5.159

GRAVY (calculated)

0.023

Length

386 amino acids

Sequence
(BLAST)

001: MAALQYLESF CNAPSQLSDW YTTLADLYQR KLWHQLTLKL EQFVALPVFK AGDGLIQLYH NFITDFETKI NLLKLAQFAV IVSRQYPEKE AAIGFLEGVT
101: EKLHNTKEIR IEEPILYIKM QIALFKLEQG DPKECQKLLD EGKTTLDSMT DIDPSVYASY YWVSSQYHKT RQEFAEFYKS ALLYLAYTSV ESLSESFKLD
201: LAFDLSLSAL LGDNIYNFGE LLAHPIIKSL IGTKVEWLYY ILEAFNTGDL VHYQKLCHVH QAALTAQPAL VQNEKKLLEK INILCLMEII FSRPAYDRTI
301: PLSVIAERTK LSVEDVEYLL MKSLSVHLIE GIIDQVEGTV HVSWVQPRVL GIPQIKSLRD RLDNWVDKVH TALLSVEAET PDLVAA

Best Arabidopsis Sequence Match ( AT4G19006.1 )
(BLAST)

001: MAALQYLESQ KNAHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALSVFQ AGDALIQLYN NFITDFETRI NLLKLAHFAV VVSRQYPEKE AAVSYLEGVI
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA

Arabidopsis Description

Proteasome component (PCI) domain protein [Source:TAIR;Acc:AT4G19006]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.