CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH23958
KRH39841

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45620.1	KRH23958	AT4G25200.1	21798944
AT5G45620.1	KRH39841	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39622	Soybean	cytosol	97.41	97.41
VIT_02s0012g02660.t01	Wine grape	cytosol	89.9	89.9
PGSC0003DMT400062813	Potato	cytosol	87.05	87.05
Solyc09g090720.2.1	Tomato	cytosol, nucleus	85.75	85.75
Solyc05g053140.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	85.75	85.75
PGSC0003DMT400069954	Potato	cytosol	85.75	85.75
AT5G45620.1	Thale cress	cytosol	83.16	83.16
Bra020980.1-P	Field mustard	cytosol	82.9	82.9
CDX76502	Canola	cytosol	82.9	82.9
CDY69914	Canola	cytosol, extracellular	82.12	82.12
Bra025066.1-P	Field mustard	cytosol	82.12	82.12
CDY69078	Canola	cytosol	82.12	82.12
CDY39438	Canola	cytosol	81.87	81.87
GSMUA_Achr2P09740_001	Banana	cytoskeleton, cytosol, peroxisome	81.87	81.65
GSMUA_Achr5P03630_001	Banana	cytosol	81.09	80.88
GSMUA_Achr7P06760_001	Banana	cytosol, nucleus, plastid	41.19	79.5
Zm00001d014436_P001	Maize	cytosol	77.98	78.18
Os03t0214600-01	Rice	cytosol	77.46	77.66
Os01t0511300-01	Rice	cytosol, plasma membrane	76.42	76.62
CDX99654	Canola	cytosol, mitochondrion, nucleus	20.21	73.58
AT4G19006.2	Thale cress	cytosol	83.42	73.35
HORVU2Hr1G102810.3	Barley	cytosol	73.06	72.87
TraesCS1A01G196300.1	Wheat	cytosol, golgi	71.5	71.69
TraesCS1B01G210900.1	Wheat	cytosol, golgi	71.5	71.69
TraesCS1D01G199700.1	Wheat	cytosol	71.5	71.69
Zm00001d030126_P002	Maize	endoplasmic reticulum, golgi, vacuole	78.24	68.48
HORVU1Hr1G051120.1	Barley	cytosol	42.49	68.05
Zm00001d002455_P001	Maize	cytosol, golgi	58.29	67.37
HORVU2Hr1G034690.3	Barley	mitochondrion	71.76	65.48
TraesCS1B01G327800.1	Wheat	mitochondrion	33.68	55.32
OQU82238	Sorghum	extracellular	19.43	44.64

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:100793480	MapMan:19.2.6.2.2.8	EMBL:ACUP02000012	EMBL:BT097141	UniProt:C6THL8
EnsemblPlantsGene:GLYMA_01G011100	GO:GO:0003674	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0008541	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0043248
InterPro:IPR000717	EnsemblPlants:KRH74300	ProteinID:KRH74300	ProteinID:KRH74300.1	InterPro:PCI_dom	PFAM:PF01399
PFscan:PS50250	InterPro:PSMD13	PANTHER:PTHR10539	PANTHER:PTHR10539:SF2	SMART:SM00088	SMART:SM00753
SUPFAM:SSF46785	UniParc:UPI0001B16700	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:1057125..1061925

Molecular Weight (calculated)

44058.2 Da

IEP (calculated)

5.279

GRAVY (calculated)

-0.038

Length

386 amino acids

Sequence
(BLAST)

001: MAALQYLESL RNAHPELSDW YNSLADLYQN KLWHQLTLKL EQFVALAVFQ AGDALIQLYH NFITDFETKI NLLKLAHFAV IVSRQYAEKE AAVGYLGGVI
101: QKLQDTREQR IEEPILYIKM QIAILKLEQG DQKECKKLLE DGKSTLDSMT DIDPSVYASY YWVSSQFHKT RQEFAEFYKS ALLYLAYTSV ESLSDSFKLD
201: LAFDLSLSAL LGDNIYNFGE LLAHPIIKSL MGTKVEWLYY ILQAFNAGDL LQYQELCRVH NAALRAQPAL VQNEQKLSEK INILCLMEII FSRPSEDRTI
301: PLSVIAERTK LSIENVEHLL MKSLSVHLIE GIIDQVEGTV HVSWVQPRVL GIQQIKSLRD RLDSWTGKVH TALLSIEAET PDLIGS

Best Arabidopsis Sequence Match ( AT4G19006.1 )
(BLAST)

001: MAALQYLESQ KNAHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALSVFQ AGDALIQLYN NFITDFETRI NLLKLAHFAV VVSRQYPEKE AAVSYLEGVI
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA

Arabidopsis Description

Proteasome component (PCI) domain protein [Source:TAIR;Acc:AT4G19006]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.