Factsheet for Zm00001d030126_P002

Subcellular Localization

min:

: max

Winner_takes_all: golgi, endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 4
golgi 5
plasma membrane 4
endoplasmic reticulum 5
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d044874_P001
Zm00001d052194_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45620.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT5G45620.1	Zm00001d052194_P001	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG38813	Sorghum	cytosol	84.81	97.14
Zm00001d014436_P001	Maize	cytosol	83.67	95.84
Os01t0511300-01	Rice	cytosol, plasma membrane	80.95	92.73
Os03t0214600-01	Rice	cytosol	80.27	91.95
TraesCS1D01G199700.1	Wheat	cytosol	75.74	86.75
TraesCS1B01G210900.1	Wheat	cytosol, golgi	75.74	86.75
TraesCS1A01G196300.1	Wheat	cytosol, golgi	75.06	85.97
HORVU1Hr1G051120.1	Barley	cytosol	46.26	84.65
VIT_02s0012g02660.t01	Wine grape	cytosol	70.07	80.05
HORVU2Hr1G034690.3	Barley	mitochondrion	75.96	79.2
KRH39622	Soybean	cytosol	69.16	79.02
GSMUA_Achr7P06760_001	Banana	cytosol, nucleus, plastid	35.83	79.0
KRH74300	Soybean	cytosol	68.48	78.24
Solyc05g053140.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	68.25	77.98
GSMUA_Achr5P03630_001	Banana	cytosol	68.25	77.78
GSMUA_Achr2P09740_001	Banana	cytoskeleton, cytosol, peroxisome	68.25	77.78
PGSC0003DMT400069954	Potato	cytosol	68.03	77.72
PGSC0003DMT400062813	Potato	cytosol	67.8	77.46
Solyc09g090720.2.1	Tomato	cytosol, nucleus	67.12	76.68
CDX76502	Canola	cytosol	66.89	76.42
Bra020980.1-P	Field mustard	cytosol	66.89	76.42
CDY69914	Canola	cytosol, extracellular	66.67	76.17
AT5G45620.1	Thale cress	cytosol	64.85	74.09
CDX99654	Canola	cytosol, mitochondrion, nucleus	17.69	73.58
CDY39438	Canola	cytosol	64.17	73.32
CDY69078	Canola	cytosol	63.95	73.06
Bra025066.1-P	Field mustard	cytosol	63.95	73.06
Zm00001d002455_P001	Maize	cytosol, golgi	53.29	70.36
AT4G19006.2	Thale cress	cytosol	66.67	66.97

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:100283395	MapMan:19.2.6.2.2.8	UniProt:A0A1D6KA46	GO:GO:0000502	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	InterPro:IPR000717	ProteinID:ONM00350.1	ProteinID:ONM00362.1	InterPro:PCI_dom
PFAM:PF01399	PFscan:PS50250	InterPro:PSMD13	PANTHER:PTHR10539	PANTHER:PTHR10539:SF2	SMART:SM00088
SMART:SM00753	SUPFAM:SSF46785	SignalP:SignalP-noTM	UniParc:UPI000220E1BB	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d030126
EnsemblPlants:Zm00001d030126_P002	EnsemblPlants:Zm00001d030126_T002	SEG:seg	:	:	:

Description

26S proteasome non-ATPase regulatory subunit 13 homolog A

Coordinates

chr1:-:107682051..107686329

Molecular Weight (calculated)

49595.2 Da

IEP (calculated)

5.457

GRAVY (calculated)

0.119

Length

441 amino acids

Sequence
(BLAST)

001: MYSCWCVRPV AAVGLLCLVL AIESRPAEID LLVDRSGSFP SVSRCLLGTG TGGGVAMALQ YVEAQRQLRP DLSDWYASLA DLYQRKLWHQ LTLKLDQFLQ
101: LQVAQTGDTI IQLYNNFIVD FETKINLLKL AHFAVITSRQ YPDKDAAITF LEGVITKLRE TRESRINEPI LYVKMQIAAI NLEKGNKKEC KNLLEDGKTT
201: LDSMTDVDPT VHASFYWISS QYHKACQEFA EFYKNALLYL AYTTVESLSE SFKLDLAFDL SLAALLGDNI YNFGELLAHP IINSLIGTKV EWVYHMLQAF
301: NSGNLALYQE LCRVHNAALT AQPALVQNER KLLEKINILC LMEIIFSRPS EDRTIPLSVI AERTKLSISD VECLLMKSLS VHLIEGIIDE VDSTVHVSWV
401: QPRVLGIPQV KALRDRLDAW VGKVHTTLLS VEAETPDLVA V

Best Arabidopsis Sequence Match ( AT4G19006.1 )
(BLAST)

001: MAALQYLESQ KNAHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALSVFQ AGDALIQLYN NFITDFETRI NLLKLAHFAV VVSRQYPEKE AAVSYLEGVI
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA

Arabidopsis Description

Proteasome component (PCI) domain protein [Source:TAIR;Acc:AT4G19006]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.