Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400012249 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G45620.1 | PGSC0003DMT400012249 | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g090720.2.1 | Tomato | cytosol, nucleus | 98.19 | 98.19 |
| PGSC0003DMT400069954 | Potato | cytosol | 89.38 | 89.38 |
| VIT_02s0012g02660.t01 | Wine grape | cytosol | 88.86 | 88.86 |
| KRH39622 | Soybean | cytosol | 88.08 | 88.08 |
| KRH74300 | Soybean | cytosol | 87.05 | 87.05 |
| AT5G45620.1 | Thale cress | cytosol | 82.9 | 82.9 |
| CDY39438 | Canola | cytosol | 82.12 | 82.12 |
| Bra025066.1-P | Field mustard | cytosol | 81.87 | 81.87 |
| GSMUA_Achr2P09740_001 | Banana | cytoskeleton, cytosol, peroxisome | 81.87 | 81.65 |
| Bra020980.1-P | Field mustard | cytosol | 81.61 | 81.61 |
| CDX76502 | Canola | cytosol | 81.61 | 81.61 |
| GSMUA_Achr5P03630_001 | Banana | cytosol | 81.61 | 81.4 |
| CDY69078 | Canola | cytosol | 81.35 | 81.35 |
| CDY69914 | Canola | cytosol, extracellular | 81.35 | 81.35 |
| GSMUA_Achr7P06760_001 | Banana | cytosol, nucleus, plastid | 41.97 | 81.0 |
| Os03t0214600-01 | Rice | cytosol | 77.72 | 77.92 |
| CDX99654 | Canola | cytosol, mitochondrion, nucleus | 21.24 | 77.36 |
| Zm00001d014436_P001 | Maize | cytosol | 76.68 | 76.88 |
| Os01t0511300-01 | Rice | cytosol, plasma membrane | 76.42 | 76.62 |
| HORVU2Hr1G102810.3 | Barley | cytosol | 74.61 | 74.42 |
| AT4G19006.2 | Thale cress | cytosol | 83.16 | 73.12 |
| TraesCS1B01G210900.1 | Wheat | cytosol, golgi | 70.73 | 70.91 |
| TraesCS1D01G199700.1 | Wheat | cytosol | 70.73 | 70.91 |
| TraesCS1A01G196300.1 | Wheat | cytosol, golgi | 70.47 | 70.65 |
| Zm00001d002455_P001 | Maize | cytosol, golgi | 59.33 | 68.56 |
| Zm00001d030126_P002 | Maize | endoplasmic reticulum, golgi, vacuole | 77.46 | 67.8 |
| HORVU1Hr1G051120.1 | Barley | cytosol | 41.97 | 67.22 |
| HORVU2Hr1G034690.3 | Barley | mitochondrion | 70.47 | 64.3 |
| TraesCS1B01G327800.1 | Wheat | mitochondrion | 33.94 | 55.74 |
| OQU82238 | Sorghum | extracellular | 21.24 | 48.81 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400062813 | EnsemblPlantsGene:PGSC0003DMG400024449 | EntrezGene:102598387 | Gene3D:1.25.40.570 | InterPro:IPR000717 | InterPro:PCI_dom |
| InterPro:PSMD13 | InterPro:WH_DNA-bd_sf | PANTHER:PTHR10539 | PANTHER:PTHR10539:SF2 | PFAM:PF01399 | PFscan:PS50250 |
| PGSC:PGSC0003DMG400024449 | RefSeq:XP_006368029.1 | SEG:seg | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 |
| UniParc:UPI000296780B | UniProt:M1C9K3 | MapMan:19.2.6.2.2.8 | : | : | : |
Description
26S proteasome subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400024449]
Coordinates
chr9:-:57068715..57073985
Molecular Weight (calculated)
44120.1 Da
IEP (calculated)
4.979
GRAVY (calculated)
-0.043
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALQYLESL RNDHPELSDW YTTLADLYQR KLWHQLSLKL EQFVALAVFQ AGDTLIQLYH NFITDFETKI NLLKLAHFAV IVSRQYSEKD AAIGYLEGVA
101: EKLQNTKETR IEEPILYIKL QIALFKLEQG DQKECKKLLE QGNATLDSMT DVDPSVYASY YWVSSQYHKT RQEFAEFYKS ALLYLAYISV DSLSESFKLD
201: LAFDLSLSAL LGDNVYNFGE LLAHPIIKSL VGTQVEWLYH ILEAFNTGDL VRYQELCRVH QAALSAQPAL LQNEKKLLEK INILCLMEII FSRPAEDRTI
301: PLSAIAERTK LSVEDVEHLL MKSLSVHLIE GIIDQVEGTV HVSWVQPRVL GIPQIKSLRD RLDNWVDKVH TALLSVEAET PDLVSS
101: EKLQNTKETR IEEPILYIKL QIALFKLEQG DQKECKKLLE QGNATLDSMT DVDPSVYASY YWVSSQYHKT RQEFAEFYKS ALLYLAYISV DSLSESFKLD
201: LAFDLSLSAL LGDNVYNFGE LLAHPIIKSL VGTQVEWLYH ILEAFNTGDL VRYQELCRVH QAALSAQPAL LQNEKKLLEK INILCLMEII FSRPAEDRTI
301: PLSAIAERTK LSVEDVEHLL MKSLSVHLIE GIIDQVEGTV HVSWVQPRVL GIPQIKSLRD RLDNWVDKVH TALLSVEAET PDLVSS
001: MAALQYLESQ KNAHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALSVFQ AGDALIQLYN NFITDFETRI NLLKLAHFAV VVSRQYPEKE AAVSYLEGVI
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA
Arabidopsis Description
Proteasome component (PCI) domain protein [Source:TAIR;Acc:AT4G19006]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.