Subcellular Localization
min:
: max
Winner_takes_all: golgi, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d044874_P001 | |
| Zm00001d052194_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G45620.1 | Zm00001d044874_P001 | AT4G25200.1 | 21798944 |
| AT5G45620.1 | Zm00001d052194_P001 | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P06760_001 | Banana | cytosol, nucleus, plastid | 40.42 | 67.5 |
| HORVU2Hr1G102810.3 | Barley | cytosol | 77.84 | 67.18 |
| VIT_02s0012g02660.t01 | Wine grape | cytosol | 70.66 | 61.14 |
| Zm00001d014436_P001 | Maize | cytosol | 70.06 | 60.78 |
| GSMUA_Achr5P03630_001 | Banana | cytosol | 68.86 | 59.43 |
| PGSC0003DMT400062813 | Potato | cytosol | 68.56 | 59.33 |
| Solyc09g090720.2.1 | Tomato | cytosol, nucleus | 68.56 | 59.33 |
| KRH39622 | Soybean | cytosol | 68.56 | 59.33 |
| CDX99654 | Canola | cytosol, mitochondrion, nucleus | 18.56 | 58.49 |
| KRH74300 | Soybean | cytosol | 67.37 | 58.29 |
| GSMUA_Achr2P09740_001 | Banana | cytoskeleton, cytosol, peroxisome | 66.77 | 57.62 |
| PGSC0003DMT400069954 | Potato | cytosol | 65.87 | 56.99 |
| Solyc05g053140.2.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 65.87 | 56.99 |
| CDX76502 | Canola | cytosol | 64.67 | 55.96 |
| Bra020980.1-P | Field mustard | cytosol | 64.67 | 55.96 |
| CDY69914 | Canola | cytosol, extracellular | 64.07 | 55.44 |
| AT5G45620.1 | Thale cress | cytosol | 63.47 | 54.92 |
| CDY69078 | Canola | cytosol | 62.57 | 54.15 |
| CDY39438 | Canola | cytosol | 62.57 | 54.15 |
| Bra025066.1-P | Field mustard | cytosol | 62.57 | 54.15 |
| Zm00001d030126_P002 | Maize | endoplasmic reticulum, golgi, vacuole | 70.36 | 53.29 |
| TraesCS1B01G327800.1 | Wheat | mitochondrion | 36.83 | 52.34 |
| AT4G19006.2 | Thale cress | cytosol | 64.37 | 48.97 |
Protein Annotations
| Gene3D:1.25.40.570 | EntrezGene:100273828 | MapMan:19.2.6.2.2.8 | UniProt:A0A1D6E0U0 | GO:GO:0000502 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | InterPro:IPR000717 | ProteinID:ONM14338.1 | InterPro:PCI_dom | PFAM:PF01399 |
| PFscan:PS50250 | InterPro:PSMD13 | PANTHER:PTHR10539 | PANTHER:PTHR10539:SF2 | SMART:SM00088 | SMART:SM00753 |
| SUPFAM:SSF46785 | UniParc:UPI000844C14B | InterPro:WH_DNA-bd_sf | EnsemblPlantsGene:Zm00001d002455 | EnsemblPlants:Zm00001d002455_P001 | EnsemblPlants:Zm00001d002455_T001 |
| SEG:seg | : | : | : | : | : |
Description
26S proteasome non-ATPase regulatory subunit 13 homolog A
Coordinates
chr2:-:13189111..13192008
Molecular Weight (calculated)
37817.9 Da
IEP (calculated)
5.231
GRAVY (calculated)
0.034
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MQKDFFRLGS PVTKPALKLE QFLALAVVQA GDALIHLYNH FISDFETKIS LLKFAHFTVV VSHQYLDKNA GINYLEGVIS KLRDTRESRV EEPILYVKMQ
101: IATFLLEKGN QKDCKNLLEE GKTTLDSMVD VDPSVHGTYY WDLYEFQNLA LDLSLAALLG ENIYNFGELL AHPIIHSLLG TQAEWIFHML QAFNSGNLSL
201: YQEICKAHSN ALSAQLALVQ NERNLLEKIN MLCLMEIIFS RSSENRTIPM RDIAEQTKLP VEDVEYLLMK SLSARLIEGI IDQVDGVVHV SRVKPRVLGI
301: DQVKCLHDRL DTWIGKVDTI LLSVEAETPD LVSS
101: IATFLLEKGN QKDCKNLLEE GKTTLDSMVD VDPSVHGTYY WDLYEFQNLA LDLSLAALLG ENIYNFGELL AHPIIHSLLG TQAEWIFHML QAFNSGNLSL
201: YQEICKAHSN ALSAQLALVQ NERNLLEKIN MLCLMEIIFS RSSENRTIPM RDIAEQTKLP VEDVEYLLMK SLSARLIEGI IDQVDGVVHV SRVKPRVLGI
301: DQVKCLHDRL DTWIGKVDTI LLSVEAETPD LVSS
001: MTTIVPTSEE NPFLAVVRFT SQLAWADAGP EAAEPEITRL CREAEESMVA EKWLELSSLM VTSAELVSSK ISEKDLECTY TIICSIVKNA KSPEQVLEMV
101: KAIASKVAQQ PSDKASLRLK ILFNLYNLVD HPYARFQVYM KALTLAVDGK VTEYIVSSFK KIDNFLKEWN IDIKDQRELF LAIANVLKEN KSLVNESLKF
201: LTKYLATFSN EDAQVLDEAK EEAVRAVIEF VKASSIFQCD LLDLPAVAQL EKDAKYAPVY QLLKIFLTQR LNAYTEFQNA NSGFLQSYGL SNEDCVTKMR
301: LLSLVDLASD ESGKIPYTSI KDTLQVNEQD VELWIVKAIT AKLIECKMDQ MNQVLIVSRS SEREFGTKQW QSLRTKLATW KDNISSIITT IESNKVTEEG
401: SQASSSSAAA IQGLSVR
101: KAIASKVAQQ PSDKASLRLK ILFNLYNLVD HPYARFQVYM KALTLAVDGK VTEYIVSSFK KIDNFLKEWN IDIKDQRELF LAIANVLKEN KSLVNESLKF
201: LTKYLATFSN EDAQVLDEAK EEAVRAVIEF VKASSIFQCD LLDLPAVAQL EKDAKYAPVY QLLKIFLTQR LNAYTEFQNA NSGFLQSYGL SNEDCVTKMR
301: LLSLVDLASD ESGKIPYTSI KDTLQVNEQD VELWIVKAIT AKLIECKMDQ MNQVLIVSRS SEREFGTKQW QSLRTKLATW KDNISSIITT IESNKVTEEG
401: SQASSSSAAA IQGLSVR
Arabidopsis Description
Eukaryotic translation initiation factor 3 subunit M [Source:UniProtKB/TrEMBL;Acc:A0A178VHW5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.