Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39438 | Canola | cytosol | 95.08 | 95.08 |
| Bra025066.1-P | Field mustard | cytosol | 94.82 | 94.82 |
| CDY69078 | Canola | cytosol | 94.04 | 94.04 |
| VIT_02s0012g02660.t01 | Wine grape | cytosol | 85.49 | 85.49 |
| KRH39622 | Soybean | cytosol | 84.2 | 84.2 |
| KRH74300 | Soybean | cytosol | 83.16 | 83.16 |
| CDX99654 | Canola | cytosol, mitochondrion, nucleus | 22.8 | 83.02 |
| PGSC0003DMT400062813 | Potato | cytosol | 82.9 | 82.9 |
| AT4G19006.2 | Thale cress | cytosol | 93.52 | 82.23 |
| Solyc09g090720.2.1 | Tomato | cytosol, nucleus | 81.61 | 81.61 |
| Solyc05g053140.2.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 81.61 | 81.61 |
| PGSC0003DMT400069954 | Potato | cytosol | 81.61 | 81.61 |
| GSMUA_Achr2P09740_001 | Banana | cytoskeleton, cytosol, peroxisome | 77.98 | 77.78 |
| GSMUA_Achr5P03630_001 | Banana | cytosol | 77.72 | 77.52 |
| GSMUA_Achr7P06760_001 | Banana | cytosol, nucleus, plastid | 40.16 | 77.5 |
| Os03t0214600-01 | Rice | cytosol | 74.61 | 74.81 |
| Zm00001d014436_P001 | Maize | cytosol | 74.09 | 74.29 |
| Os01t0511300-01 | Rice | cytosol, plasma membrane | 73.32 | 73.51 |
| HORVU2Hr1G102810.3 | Barley | cytosol | 72.02 | 71.83 |
| TraesCS1B01G210900.1 | Wheat | cytosol, golgi | 65.8 | 65.97 |
| TraesCS1D01G199700.1 | Wheat | cytosol | 65.8 | 65.97 |
| TraesCS1A01G196300.1 | Wheat | cytosol, golgi | 65.54 | 65.71 |
| Zm00001d030126_P002 | Maize | endoplasmic reticulum, golgi, vacuole | 74.09 | 64.85 |
| Zm00001d002455_P001 | Maize | cytosol, golgi | 54.92 | 63.47 |
| HORVU1Hr1G051120.1 | Barley | cytosol | 38.6 | 61.83 |
| HORVU2Hr1G034690.3 | Barley | mitochondrion | 65.54 | 59.81 |
| TraesCS1B01G327800.1 | Wheat | mitochondrion | 32.38 | 53.19 |
| OQU82238 | Sorghum | extracellular | 18.65 | 42.86 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.6.2.2.8 | EntrezGene:834602 | UniProt:A0A178UQ20 | ProteinID:AED95277.1 | ArrayExpress:AT5G45620 |
| EnsemblPlantsGene:AT5G45620 | RefSeq:AT5G45620 | TAIR:AT5G45620 | RefSeq:AT5G45620-TAIR-G | EnsemblPlants:AT5G45620.1 | TAIR:AT5G45620.1 |
| EMBL:AY093136 | EMBL:AY230841 | Unigene:At.23294 | Unigene:At.74818 | ProteinID:BAB09205.1 | EMBL:BT003384 |
| GO:GO:0000502 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008541 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0043248 |
| InterPro:IPR000717 | RefSeq:NP_199375.2 | ProteinID:OAO95755.1 | InterPro:PCI_dom | PFAM:PF01399 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50250 |
| InterPro:PSMD13 | PANTHER:PTHR10539 | PANTHER:PTHR10539:SF2 | UniProt:Q8RWF0 | SMART:SM00088 | SMART:SM00753 |
| SUPFAM:SSF46785 | UniParc:UPI000000BFE9 | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
RPN9A26S proteasome non-ATPase regulatory subunit 13 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q8RWF0]
Coordinates
chr5:+:18501486..18504144
Molecular Weight (calculated)
44170.2 Da
IEP (calculated)
4.982
GRAVY (calculated)
-0.026
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALQYLESL KNTHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALAVFQ AGDALIQFYH NFITDFETKI NLLKLAHFAV VVSRQYSEKE AAVSYLESVI
101: EKLRATKEPR ITEPIIYIET QKALFKLEQG DQKECKKILD DGKSSLDSMT DIDPSVYANF YWVSSQYHKC RQEFSDFYKS ALLYLAYTSV EDLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLIAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSIIAERTK LSIEDVEHLL MKSLSVHLIE GIIDQVNGTI YVSWAQPRVL GIPQIKALRD QLDSWVDKVH TTLLSVEAET PDLVAA
101: EKLRATKEPR ITEPIIYIET QKALFKLEQG DQKECKKILD DGKSSLDSMT DIDPSVYANF YWVSSQYHKC RQEFSDFYKS ALLYLAYTSV EDLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLIAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSIIAERTK LSIEDVEHLL MKSLSVHLIE GIIDQVNGTI YVSWAQPRVL GIPQIKALRD QLDSWVDKVH TTLLSVEAET PDLVAA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.