Factsheet for GSMUA_Achr7P06760_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45620.1	GSMUA_Achr10P...	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99654	Canola	cytosol, mitochondrion, nucleus	39.0	73.58
VIT_02s0012g02660.t01	Wine grape	cytosol	82.5	42.75
GSMUA_Achr2P09740_001	Banana	cytoskeleton, cytosol, peroxisome	82.0	42.38
Solyc09g090720.2.1	Tomato	cytosol, nucleus	81.0	41.97
PGSC0003DMT400062813	Potato	cytosol	81.0	41.97
KRH39622	Soybean	cytosol	80.5	41.71
Solyc05g053140.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	80.5	41.71
PGSC0003DMT400069954	Potato	cytosol	80.0	41.45
KRH74300	Soybean	cytosol	79.5	41.19
KXG38813	Sorghum	cytosol	79.0	41.04
Bra020980.1-P	Field mustard	cytosol	79.0	40.93
CDX76502	Canola	cytosol	79.0	40.93
GSMUA_Achr5P03630_001	Banana	cytosol	79.0	40.83
Os03t0214600-01	Rice	cytosol	78.5	40.78
CDY69914	Canola	cytosol, extracellular	78.5	40.67
Zm00001d014436_P001	Maize	cytosol	78.0	40.52
Os01t0511300-01	Rice	cytosol, plasma membrane	78.0	40.52
Zm00001d002455_P001	Maize	cytosol, golgi	67.5	40.42
AT5G45620.1	Thale cress	cytosol	77.5	40.16
CDY39438	Canola	cytosol	77.5	40.16
Bra025066.1-P	Field mustard	cytosol	77.5	40.16
CDY69078	Canola	cytosol	77.0	39.9
HORVU2Hr1G102810.3	Barley	cytosol	75.0	38.76
Zm00001d030126_P002	Maize	endoplasmic reticulum, golgi, vacuole	79.0	35.83
AT4G19006.2	Thale cress	cytosol	78.5	35.76
TraesCS1A01G196300.1	Wheat	cytosol, golgi	68.0	35.32
TraesCS1B01G210900.1	Wheat	cytosol, golgi	68.0	35.32
TraesCS1D01G199700.1	Wheat	cytosol	68.0	35.32
HORVU2Hr1G034690.3	Barley	mitochondrion	67.5	31.91
HORVU1Hr1G051120.1	Barley	cytosol	13.5	11.2
TraesCS1B01G327800.1	Wheat	mitochondrion	12.5	10.64

Protein Annotations

EnsemblPlants:GSMUA_Achr7P06760_001	EnsemblPlants:GSMUA_Achr7T06760_001	EnsemblPlantsGene:GSMUA_Achr7G06760_001	Gene3D:1.25.40.570	InterPro:IPR000717	InterPro:PCI_dom
InterPro:PSMD13	InterPro:WH_DNA-bd_sf	PANTHER:PTHR10539	PANTHER:PTHR10539:SF2	PFAM:PF01399	PFscan:PS50250
SEG:seg	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0002969323	UniProt:M0TFB6
MapMan:19.2.6.2.2.8	:	:	:	:	:

Description

Putative 26S proteasome non-ATPase regulatory subunit 13 [Source:GMGC_GENE;Acc:GSMUA_Achr7G06760_001]

Coordinates

chr7:+:4954766..4963289

Molecular Weight (calculated)

22484.5 Da

IEP (calculated)

5.057

GRAVY (calculated)

0.172

Length

200 amino acids

Sequence
(BLAST)

001: MTRQSISMMQ ERDLAFDLSL SALLGDNVFN FGELLAHPII NSLTGTNVEW LYHILHAFNS GNLLRYQELC RVHNIALCAQ PALVENEKKL LEKINILCLM
101: EIISSRPSED RTIPLSVIAE RTKLSIEDVE YLLMKSLSVH LIEGIIDQVE GTVHVSWVQP RVLGIPQISS LRDRLDTWVG KVRQALLSVE AETPDLVACA

Best Arabidopsis Sequence Match ( AT4G19006.1 )
(BLAST)

001: MAALQYLESQ KNAHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALSVFQ AGDALIQLYN NFITDFETRI NLLKLAHFAV VVSRQYPEKE AAVSYLEGVI
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA

Arabidopsis Description

Proteasome component (PCI) domain protein [Source:TAIR;Acc:AT4G19006]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.