CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014436_P001	Maize	cytosol	97.66	97.66
Os01t0511300-01	Rice	cytosol, plasma membrane	94.81	94.81
Os03t0214600-01	Rice	cytosol	94.81	94.81
TraesCS1B01G210900.1	Wheat	cytosol, golgi	87.53	87.53
TraesCS1D01G199700.1	Wheat	cytosol	87.27	87.27
TraesCS1A01G196300.1	Wheat	cytosol, golgi	86.75	86.75
HORVU1Hr1G051120.1	Barley	cytosol	53.77	85.89
Zm00001d030126_P002	Maize	endoplasmic reticulum, golgi, vacuole	97.14	84.81
GSMUA_Achr7P06760_001	Banana	cytosol, nucleus, plastid	41.04	79.0
HORVU2Hr1G034690.3	Barley	mitochondrion	86.75	78.96
GSMUA_Achr2P09740_001	Banana	cytoskeleton, cytosol, peroxisome	78.96	78.55
GSMUA_Achr5P03630_001	Banana	cytosol	78.44	78.04
OQU82238	Sorghum	extracellular	20.52	47.02

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.8	UniProt:A0A1B6QLN2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000717	EnsemblPlants:KXG38813	ProteinID:KXG38813	ProteinID:KXG38813.1	ProteinID:KXG38814.1	InterPro:PCI_dom
PFAM:PF01399	PFscan:PS50250	InterPro:PSMD13	PANTHER:PTHR10539	PANTHER:PTHR10539:SF2	SMART:SM00088
SMART:SM00753	EnsemblPlantsGene:SORBI_3001G283200	SUPFAM:SSF46785	UniParc:UPI0001C80B43	InterPro:WH_DNA-bd_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:55572823..55576807

Molecular Weight (calculated)

43815.9 Da

IEP (calculated)

5.431

GRAVY (calculated)

-0.023

Length

385 amino acids

Sequence
(BLAST)

001: MALQYVEAQR QARPDLADWY ASLADLYQRK LWHQLTLKLD QFLQLQAAQT GDTIIQLYNN FITDFETKIN LLKLAHFAVI ASRQYPDKDA AITFLEGVIT
101: KLRETRESRI NEPILYVKMQ IAAINLEKGN QKECKNLLDD GKTTLDSMTD VDPTVHASFY WISSQYHKAR QEFAEFYKNA LLYLAYTTVE SLSESFKLDL
201: AFDLSLAALL GDNIYNFGEL LAHPIINSLI GTKVEWVYHM LQAFNTGNLA LYQELCRVHN AALTAQPALV QNERKLLEKI NILCLMEIIF SRPSEDRTIP
301: LSVIAERTKL SISDVEYLLM KSLSVHLIEG IIDEVDSTVH VSWVQPRVLG IPQVKALRDR LDAWVGKVHT TLLSVEAETP DLVAA

Best Arabidopsis Sequence Match ( AT4G19006.1 )
(BLAST)

001: MAALQYLESQ KNAHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALSVFQ AGDALIQLYN NFITDFETRI NLLKLAHFAV VVSRQYPEKE AAVSYLEGVI
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA

Arabidopsis Description

Proteasome component (PCI) domain protein [Source:TAIR;Acc:AT4G19006]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.