Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d044874_P001 | |
| Zm00001d052194_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G45620.1 | Zm00001d044874_P001 | AT4G25200.1 | 21798944 |
| AT5G45620.1 | Zm00001d052194_P001 | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG38813 | Sorghum | cytosol | 97.66 | 97.66 |
| Os01t0511300-01 | Rice | cytosol, plasma membrane | 92.99 | 92.99 |
| Os03t0214600-01 | Rice | cytosol | 92.47 | 92.47 |
| TraesCS1B01G210900.1 | Wheat | cytosol, golgi | 87.01 | 87.01 |
| TraesCS1D01G199700.1 | Wheat | cytosol | 86.75 | 86.75 |
| TraesCS1A01G196300.1 | Wheat | cytosol, golgi | 86.23 | 86.23 |
| HORVU1Hr1G051120.1 | Barley | cytosol | 53.51 | 85.48 |
| Zm00001d030126_P002 | Maize | endoplasmic reticulum, golgi, vacuole | 95.84 | 83.67 |
| VIT_02s0012g02660.t01 | Wine grape | cytosol | 80.26 | 80.05 |
| HORVU2Hr1G034690.3 | Barley | mitochondrion | 86.23 | 78.49 |
| KRH39622 | Soybean | cytosol | 78.44 | 78.24 |
| GSMUA_Achr7P06760_001 | Banana | cytosol, nucleus, plastid | 40.52 | 78.0 |
| KRH74300 | Soybean | cytosol | 78.18 | 77.98 |
| GSMUA_Achr5P03630_001 | Banana | cytosol | 78.18 | 77.78 |
| GSMUA_Achr2P09740_001 | Banana | cytoskeleton, cytosol, peroxisome | 78.18 | 77.78 |
| Solyc05g053140.2.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 77.92 | 77.72 |
| PGSC0003DMT400069954 | Potato | cytosol | 77.66 | 77.46 |
| PGSC0003DMT400062813 | Potato | cytosol | 76.88 | 76.68 |
| CDX76502 | Canola | cytosol | 76.88 | 76.68 |
| Bra020980.1-P | Field mustard | cytosol | 76.88 | 76.68 |
| CDY69914 | Canola | cytosol, extracellular | 76.62 | 76.42 |
| Solyc09g090720.2.1 | Tomato | cytosol, nucleus | 76.36 | 76.17 |
| AT5G45620.1 | Thale cress | cytosol | 74.29 | 74.09 |
| CDX99654 | Canola | cytosol, mitochondrion, nucleus | 20.26 | 73.58 |
| CDY39438 | Canola | cytosol | 73.51 | 73.32 |
| CDY69078 | Canola | cytosol | 73.25 | 73.06 |
| Bra025066.1-P | Field mustard | cytosol | 73.25 | 73.06 |
| Zm00001d002455_P001 | Maize | cytosol, golgi | 60.78 | 70.06 |
| AT4G19006.2 | Thale cress | cytosol | 76.62 | 67.2 |
Protein Annotations
| Gene3D:1.25.40.570 | EntrezGene:100285832 | MapMan:19.2.6.2.2.8 | ProteinID:AQK66259.1 | ProteinID:AQK66260.1 | ProteinID:AQK66264.1 |
| ProteinID:AQK66268.1 | ProteinID:AQK66269.1 | ProteinID:AQK66270.1 | ProteinID:AQK66271.1 | ProteinID:AQK66272.1 | ProteinID:AQK66275.1 |
| UniProt:B4FTW8 | EMBL:BT040556 | EMBL:BT043158 | GO:GO:0000502 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | InterPro:IPR000717 | InterPro:PCI_dom | PFAM:PF01399 | PFscan:PS50250 | InterPro:PSMD13 |
| PANTHER:PTHR10539 | PANTHER:PTHR10539:SF2 | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI00017B7DB5 |
| InterPro:WH_DNA-bd_sf | EnsemblPlantsGene:Zm00001d014436 | EnsemblPlants:Zm00001d014436_P001 | EnsemblPlants:Zm00001d014436_T001 | SEG:seg | : |
Description
26S proteasome non-ATPase regulatory subunit 13 homolog A
Coordinates
chr5:+:46815072..46820691
Molecular Weight (calculated)
43731.6 Da
IEP (calculated)
4.934
GRAVY (calculated)
-0.021
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MALQYVEAQR QARPDLADWY ASLADLYQQK LWHQLTLKLD QFLQLQAAQT GDTIIQLYNN FITDFETKIN LLKLAHFAVI ASRQYPDKDA AITFLEGVIT
101: KLRDTRESRI NEPILYVKMQ IAAINLEKGN QKECKNSLED GKTTLDSMTD VDPTVHASFY WISSQYHKSC QEFAEFYKNA LLYLAYTTVE SLSESFKLDL
201: AFDLSLAALL GDNIYNFGEL LAHPIINSLI GTKVEWVYHM LQAFNTGNLA FYQELCRVHN AALTAQPALV QDERKLLEKI NILCLMEIIF SRPSEDRTIP
301: LSVIAEQTKL SISDVEYLLM KSLSVHLIEG IIDEVDSTVH VSWVQPRVLG IPQVKALRDR LDAWVGKVHT TLLSVEAETP DLVAA
101: KLRDTRESRI NEPILYVKMQ IAAINLEKGN QKECKNSLED GKTTLDSMTD VDPTVHASFY WISSQYHKSC QEFAEFYKNA LLYLAYTTVE SLSESFKLDL
201: AFDLSLAALL GDNIYNFGEL LAHPIINSLI GTKVEWVYHM LQAFNTGNLA FYQELCRVHN AALTAQPALV QDERKLLEKI NILCLMEIIF SRPSEDRTIP
301: LSVIAEQTKL SISDVEYLLM KSLSVHLIEG IIDEVDSTVH VSWVQPRVLG IPQVKALRDR LDAWVGKVHT TLLSVEAETP DLVAA
001: MAALQYLESQ KNAHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALSVFQ AGDALIQLYN NFITDFETRI NLLKLAHFAV VVSRQYPEKE AAVSYLEGVI
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA
Arabidopsis Description
Proteasome component (PCI) domain protein [Source:TAIR;Acc:AT4G19006]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.