Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytoskeleton, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- cytoskeleton 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G45620.1 | GSMUA_Achr10P... | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P03630_001 | Banana | cytosol | 88.37 | 88.37 |
| VIT_02s0012g02660.t01 | Wine grape | cytosol | 85.01 | 85.23 |
| KRH39622 | Soybean | cytosol | 82.17 | 82.38 |
| GSMUA_Achr7P06760_001 | Banana | cytosol, nucleus, plastid | 42.38 | 82.0 |
| PGSC0003DMT400062813 | Potato | cytosol | 81.65 | 81.87 |
| KRH74300 | Soybean | cytosol | 81.65 | 81.87 |
| Solyc09g090720.2.1 | Tomato | cytosol, nucleus | 80.88 | 81.09 |
| Solyc05g053140.2.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 80.62 | 80.83 |
| PGSC0003DMT400069954 | Potato | cytosol | 80.1 | 80.31 |
| Os03t0214600-01 | Rice | cytosol | 78.55 | 78.96 |
| KXG38813 | Sorghum | cytosol | 78.55 | 78.96 |
| Zm00001d014436_P001 | Maize | cytosol | 77.78 | 78.18 |
| AT5G45620.1 | Thale cress | cytosol | 77.78 | 77.98 |
| Os01t0511300-01 | Rice | cytosol, plasma membrane | 77.0 | 77.4 |
| CDY69914 | Canola | cytosol, extracellular | 77.0 | 77.2 |
| CDX76502 | Canola | cytosol | 77.0 | 77.2 |
| Bra020980.1-P | Field mustard | cytosol | 77.0 | 77.2 |
| CDY69078 | Canola | cytosol | 76.74 | 76.94 |
| CDY39438 | Canola | cytosol | 76.74 | 76.94 |
| Bra025066.1-P | Field mustard | cytosol | 76.74 | 76.94 |
| HORVU2Hr1G102810.3 | Barley | cytosol | 73.64 | 73.64 |
| TraesCS1A01G196300.1 | Wheat | cytosol, golgi | 72.09 | 72.47 |
| TraesCS1B01G210900.1 | Wheat | cytosol, golgi | 72.09 | 72.47 |
| TraesCS1D01G199700.1 | Wheat | cytosol | 72.09 | 72.47 |
| HORVU1Hr1G051120.1 | Barley | cytosol | 44.44 | 71.37 |
| CDX99654 | Canola | cytosol, mitochondrion, nucleus | 19.38 | 70.75 |
| AT4G19006.2 | Thale cress | cytosol | 77.78 | 68.56 |
| Zm00001d030126_P002 | Maize | endoplasmic reticulum, golgi, vacuole | 77.78 | 68.25 |
| Zm00001d002455_P001 | Maize | cytosol, golgi | 57.62 | 66.77 |
| HORVU2Hr1G034690.3 | Barley | mitochondrion | 71.83 | 65.72 |
| TraesCS1B01G327800.1 | Wheat | mitochondrion | 34.63 | 57.02 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P09740_001 | EnsemblPlants:GSMUA_Achr2T09740_001 | EnsemblPlantsGene:GSMUA_Achr2G09740_001 | Gene3D:1.25.40.570 | InterPro:IPR000717 | InterPro:PCI_dom |
| InterPro:PSMD13 | InterPro:WH_DNA-bd_sf | PANTHER:PTHR10539 | PANTHER:PTHR10539:SF2 | PFAM:PF01399 | PFscan:PS50250 |
| SEG:seg | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI00029673BB | UniProt:M0S6L5 |
| MapMan:19.2.6.2.2.8 | : | : | : | : | : |
Description
Putative 26S proteasome non-ATPase regulatory subunit 13 [Source:GMGC_GENE;Acc:GSMUA_Achr2G09740_001]
Coordinates
chr2:+:13163464..13168676
Molecular Weight (calculated)
44182.4 Da
IEP (calculated)
5.771
GRAVY (calculated)
-0.019
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGALQYLES QQNAQPELAD WYGALADLYQ RKLWHQLTIK LEQFVALAVF RAGDTLIQLY HNFITDFETK INLLKLAHFA TVISRQYSEK EAAISYLEGI
101: IEKLNATREL RIEEPILYAK MQIAAFYLEK GSQKECKKLL EEGERTLSSM TDVDPSVHAS YYWITSQYHK SRQEFAEFYK SALLYLAYTS VESLSASFKL
201: DLAFDLSLSA LLGDNIYNFG ELLAHPIINS LTGTKMEWLY HILQAFNVGH LIRYQELCRI HNAALNAQPA LVENEKKLLE KINILCLMEI IFSRPSEDRT
301: IPLNIIAERT KLSIQDVEYL LMKALSVHLI EGIIDQVEGT VHVSWVQPRV LGIPQIKSLR DHLDAWVGKV RTALSTVEAE TPDLIAT
101: IEKLNATREL RIEEPILYAK MQIAAFYLEK GSQKECKKLL EEGERTLSSM TDVDPSVHAS YYWITSQYHK SRQEFAEFYK SALLYLAYTS VESLSASFKL
201: DLAFDLSLSA LLGDNIYNFG ELLAHPIINS LTGTKMEWLY HILQAFNVGH LIRYQELCRI HNAALNAQPA LVENEKKLLE KINILCLMEI IFSRPSEDRT
301: IPLNIIAERT KLSIQDVEYL LMKALSVHLI EGIIDQVEGT VHVSWVQPRV LGIPQIKSLR DHLDAWVGKV RTALSTVEAE TPDLIAT
001: MAALQYLESQ KNAHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALSVFQ AGDALIQLYN NFITDFETRI NLLKLAHFAV VVSRQYPEKE AAVSYLEGVI
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA
Arabidopsis Description
Proteasome component (PCI) domain protein [Source:TAIR;Acc:AT4G19006]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.