CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89437
CDY03368

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45620.1	CDX89437	AT4G25200.1	21798944
AT5G45620.1	CDY03368	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39438	Canola	cytosol	97.93	97.93
AT5G45620.1	Thale cress	cytosol	94.04	94.04
CDX76502	Canola	cytosol	90.93	90.93
CDY69914	Canola	cytosol, extracellular	90.41	90.41
CDX99654	Canola	cytosol, mitochondrion, nucleus	24.09	87.74
VIT_02s0012g02660.t01	Wine grape	cytosol	83.16	83.16
KRH39622	Soybean	cytosol	82.9	82.9
KRH74300	Soybean	cytosol	82.12	82.12
PGSC0003DMT400062813	Potato	cytosol	81.35	81.35
Solyc05g053140.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	81.09	81.09
PGSC0003DMT400069954	Potato	cytosol	81.09	81.09
Solyc09g090720.2.1	Tomato	cytosol, nucleus	80.05	80.05
GSMUA_Achr7P06760_001	Banana	cytosol, nucleus, plastid	39.9	77.0
GSMUA_Achr2P09740_001	Banana	cytoskeleton, cytosol, peroxisome	76.94	76.74
GSMUA_Achr5P03630_001	Banana	cytosol	75.65	75.45
Zm00001d014436_P001	Maize	cytosol	73.06	73.25
Os03t0214600-01	Rice	cytosol	73.06	73.25
Os01t0511300-01	Rice	cytosol, plasma membrane	71.76	71.95
HORVU2Hr1G102810.3	Barley	cytosol	70.98	70.8
TraesCS1A01G196300.1	Wheat	cytosol, golgi	64.77	64.94
TraesCS1B01G210900.1	Wheat	cytosol, golgi	64.77	64.94
TraesCS1D01G199700.1	Wheat	cytosol	64.77	64.94
Zm00001d030126_P002	Maize	endoplasmic reticulum, golgi, vacuole	73.06	63.95
Zm00001d002455_P001	Maize	cytosol, golgi	54.15	62.57
HORVU1Hr1G051120.1	Barley	cytosol	38.6	61.83
HORVU2Hr1G034690.3	Barley	mitochondrion	65.03	59.34
TraesCS1B01G327800.1	Wheat	mitochondrion	32.12	52.77
OQU82238	Sorghum	extracellular	18.91	43.45

Protein Annotations

EnsemblPlants:CDY69078	EnsemblPlantsGene:GSBRNA2T00083014001	Gene3D:1.25.40.570	InterPro:IPR000717	InterPro:PCI_dom	InterPro:PSMD13
InterPro:WH_DNA-bd_sf	PANTHER:PTHR10539	PANTHER:PTHR10539:SF2	PFAM:PF01399	PFscan:PS50250	ProteinID:CDY69078
ProteinID:CDY69078.1	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0004EEA420	UniProt:A0A078JNF1
MapMan:19.2.6.2.2.8	:	:	:	:	:

Description

BnaCnng61780DBnaCnng61780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JNF1]

Coordinates

chrLK038603:-:576..2658

Molecular Weight (calculated)

44279.3 Da

IEP (calculated)

5.165

GRAVY (calculated)

-0.024

Length

386 amino acids

Sequence
(BLAST)

001: MAALQYLESL KNSHPELNEW YDSLSDLYQK KLWHQLTLKL EQFIALSVFQ AGDALIQFYH NFITDFETKI NLLKLAHFAV VVSRQYAEKE AAVSYLEGVI
101: EKLKATKEPR ITEPIVYIET QKALFKLEQG DQKECKKILD DAKTFLDSMT DIDPSVHANF YWVSSQYHKF RQEFSDFYKS ALLYLAYTSV EALSDSFKLD
201: LAFDFSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH HASLIAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLTVIAERTK LSIEDVEHLL MKSLSVHLIE GIIDQVNGTV YISWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA

Best Arabidopsis Sequence Match ( AT5G45620.1 )
(BLAST)

001: MAALQYLESL KNTHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALAVFQ AGDALIQFYH NFITDFETKI NLLKLAHFAV VVSRQYSEKE AAVSYLESVI
101: EKLRATKEPR ITEPIIYIET QKALFKLEQG DQKECKKILD DGKSSLDSMT DIDPSVYANF YWVSSQYHKC RQEFSDFYKS ALLYLAYTSV EDLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLIAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSIIAERTK LSIEDVEHLL MKSLSVHLIE GIIDQVNGTI YVSWAQPRVL GIPQIKALRD QLDSWVDKVH TTLLSVEAET PDLVAA

Arabidopsis Description

RPN9A26S proteasome non-ATPase regulatory subunit 13 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q8RWF0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.