Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400012249 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G45620.1 | PGSC0003DMT400012249 | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g053140.2.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 98.19 | 98.19 |
| PGSC0003DMT400062813 | Potato | cytosol | 89.38 | 89.38 |
| VIT_02s0012g02660.t01 | Wine grape | cytosol | 87.82 | 87.82 |
| KRH39622 | Soybean | cytosol | 86.01 | 86.01 |
| KRH74300 | Soybean | cytosol | 85.75 | 85.75 |
| Bra020980.1-P | Field mustard | cytosol | 81.87 | 81.87 |
| CDX76502 | Canola | cytosol | 81.87 | 81.87 |
| CDY69914 | Canola | cytosol, extracellular | 81.87 | 81.87 |
| AT5G45620.1 | Thale cress | cytosol | 81.61 | 81.61 |
| CDY39438 | Canola | cytosol | 81.61 | 81.61 |
| Bra025066.1-P | Field mustard | cytosol | 81.35 | 81.35 |
| CDY69078 | Canola | cytosol | 81.09 | 81.09 |
| GSMUA_Achr2P09740_001 | Banana | cytoskeleton, cytosol, peroxisome | 80.31 | 80.1 |
| GSMUA_Achr7P06760_001 | Banana | cytosol, nucleus, plastid | 41.45 | 80.0 |
| GSMUA_Achr5P03630_001 | Banana | cytosol | 79.27 | 79.07 |
| Os03t0214600-01 | Rice | cytosol | 78.5 | 78.7 |
| Os01t0511300-01 | Rice | cytosol, plasma membrane | 77.98 | 78.18 |
| Zm00001d014436_P001 | Maize | cytosol | 77.46 | 77.66 |
| CDX99654 | Canola | cytosol, mitochondrion, nucleus | 21.24 | 77.36 |
| HORVU2Hr1G102810.3 | Barley | cytosol | 73.58 | 73.39 |
| AT4G19006.2 | Thale cress | cytosol | 82.64 | 72.67 |
| TraesCS1B01G210900.1 | Wheat | cytosol, golgi | 70.98 | 71.17 |
| TraesCS1D01G199700.1 | Wheat | cytosol | 70.98 | 71.17 |
| TraesCS1A01G196300.1 | Wheat | cytosol, golgi | 70.73 | 70.91 |
| HORVU1Hr1G051120.1 | Barley | cytosol | 42.49 | 68.05 |
| Zm00001d030126_P002 | Maize | endoplasmic reticulum, golgi, vacuole | 77.72 | 68.03 |
| Zm00001d002455_P001 | Maize | cytosol, golgi | 56.99 | 65.87 |
| HORVU2Hr1G034690.3 | Barley | mitochondrion | 70.73 | 64.54 |
| TraesCS1B01G327800.1 | Wheat | mitochondrion | 33.68 | 55.32 |
| OQU82238 | Sorghum | extracellular | 20.47 | 47.02 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400069954 | EnsemblPlantsGene:PGSC0003DMG400027201 | EntrezGene:102599949 | Gene3D:1.25.40.570 | InterPro:IPR000717 | InterPro:PCI_dom |
| InterPro:PSMD13 | InterPro:WH_DNA-bd_sf | PANTHER:PTHR10539 | PANTHER:PTHR10539:SF2 | PFAM:PF01399 | PFscan:PS50250 |
| PGSC:PGSC0003DMG400027201 | RefSeq:XP_006355705.1 | SEG:seg | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 |
| UniParc:UPI00029580FA | UniProt:M1CLG7 | MapMan:19.2.6.2.2.8 | : | : | : |
Description
26S proteasome subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400027201]
Coordinates
chr5:-:48406345..48413526
Molecular Weight (calculated)
44262.5 Da
IEP (calculated)
5.060
GRAVY (calculated)
0.001
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALQYLESF CNAHSQLSDW YTTLADLYQR KLWHQLTLKL EQFVALPVFQ AGDGLIQLYH NFITDFETKM NLLKLAHFAV IVSRQYPEKE AAIGFLEGVT
101: EKLHNTKEIR IEEPILYIKM QIALFKLEQE DPKECQKLLD EGKTTLDSMT DIDPSVYASY YWVSSQYHKT RQEFAEFYKS ALLYLAYTSV ESLSESFKLD
201: LAFDLSLSAL LGDNIYNFGE LLAHPIIKSL IGTKVEWLYY ILEAFNTGDL VHYQKLCHVH QAALTAQPAL VQNEKKLLEK INILCLMEII FSRPADDRTI
301: PLSVIAERTK LTVEDVEYLL MKSLSVHLIE GIIDQVEGTV HVSWVQPRVL GIPQIKSLRD RLDNWVDKVH TALLSVEAET PDLVAA
101: EKLHNTKEIR IEEPILYIKM QIALFKLEQE DPKECQKLLD EGKTTLDSMT DIDPSVYASY YWVSSQYHKT RQEFAEFYKS ALLYLAYTSV ESLSESFKLD
201: LAFDLSLSAL LGDNIYNFGE LLAHPIIKSL IGTKVEWLYY ILEAFNTGDL VHYQKLCHVH QAALTAQPAL VQNEKKLLEK INILCLMEII FSRPADDRTI
301: PLSVIAERTK LTVEDVEYLL MKSLSVHLIE GIIDQVEGTV HVSWVQPRVL GIPQIKSLRD RLDNWVDKVH TALLSVEAET PDLVAA
001: MAALQYLESQ KNAHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALSVFQ AGDALIQLYN NFITDFETRI NLLKLAHFAV VVSRQYPEKE AAVSYLEGVI
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA
Arabidopsis Description
Proteasome component (PCI) domain protein [Source:TAIR;Acc:AT4G19006]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.