Factsheet for Bra020980.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76502	Canola	cytosol	100.0	100.0
Bra025066.1-P	Field mustard	cytosol	90.93	90.93
VIT_02s0012g02660.t01	Wine grape	cytosol	84.2	84.2
KRH39622	Soybean	cytosol	83.42	83.42
AT4G19006.2	Thale cress	cytosol	94.82	83.37
KRH74300	Soybean	cytosol	82.9	82.9
Solyc05g053140.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	81.87	81.87
PGSC0003DMT400069954	Potato	cytosol	81.87	81.87
PGSC0003DMT400062813	Potato	cytosol	81.61	81.61
Solyc09g090720.2.1	Tomato	cytosol, nucleus	80.31	80.31
GSMUA_Achr7P06760_001	Banana	cytosol, nucleus, plastid	40.93	79.0
Os03t0214600-01	Rice	cytosol	77.2	77.4
GSMUA_Achr2P09740_001	Banana	cytoskeleton, cytosol, peroxisome	77.2	77.0
Zm00001d014436_P001	Maize	cytosol	76.68	76.88
Os01t0511300-01	Rice	cytosol, plasma membrane	76.42	76.62
GSMUA_Achr5P03630_001	Banana	cytosol	76.42	76.23
HORVU2Hr1G102810.3	Barley	cytosol	73.83	73.64
TraesCS1B01G210900.1	Wheat	cytosol, golgi	68.39	68.57
TraesCS1D01G199700.1	Wheat	cytosol	68.39	68.57
TraesCS1A01G196300.1	Wheat	cytosol, golgi	68.13	68.31
Zm00001d030126_P002	Maize	endoplasmic reticulum, golgi, vacuole	76.42	66.89
Zm00001d002455_P001	Maize	cytosol, golgi	55.96	64.67
HORVU1Hr1G051120.1	Barley	cytosol	39.64	63.49
HORVU2Hr1G034690.3	Barley	mitochondrion	68.13	62.17
TraesCS1B01G327800.1	Wheat	mitochondrion	32.9	54.04
OQU82238	Sorghum	extracellular	20.21	46.43

Protein Annotations

EnsemblPlants:Bra020980.1	EnsemblPlants:Bra020980.1-P	EnsemblPlantsGene:Bra020980	Gene3D:1.25.40.570	InterPro:IPR000717	InterPro:PCI_dom
InterPro:PSMD13	InterPro:WH_DNA-bd_sf	PANTHER:PTHR10539	PANTHER:PTHR10539:SF2	PFAM:PF01399	PFscan:PS50250
SEG:seg	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI000254566B	UniProt:M4DWT4
MapMan:19.2.6.2.2.8	:	:	:	:	:

Description

AT4G19006 (E=4e-201) | 26S proteasome regulatory subunit, putative (RPN9)

Coordinates

chrA08:-:10793915..10795663

Molecular Weight (calculated)

44026.9 Da

IEP (calculated)

5.060

GRAVY (calculated)

-0.023

Length

386 amino acids

Sequence
(BLAST)

001: MAALQYLESQ KNAHPELTEW YNSLADLYQK KLWHQLTLKL EHFIALSVFQ AGDALIQLYN NFITDFETKI NLLKLAHFAV VVSRQYPEKE AAVSYLQGVI
101: EKLRATKESR ISEPVSYVET QIALFKLEQG DQKECKKILD DVKTSLDSMT DIDPSVYANF FWVSSQFHKF RQEFSDFYKN ALLYLAYTSV ESLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPVLKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NAALSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GIIDQVDGTV HVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA

Best Arabidopsis Sequence Match ( AT4G19006.1 )
(BLAST)

001: MAALQYLESQ KNAHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALSVFQ AGDALIQLYN NFITDFETRI NLLKLAHFAV VVSRQYPEKE AAVSYLEGVI
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA

Arabidopsis Description

Proteasome component (PCI) domain protein [Source:TAIR;Acc:AT4G19006]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.