Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0758000-01 | |
| Os06t0219500-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G45620.1 | Os02t0758000-01 | AT4G25200.1 | 21798944 |
| AT5G45620.1 | Os06t0219500-00 | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0511300-01 | Rice | cytosol, plasma membrane | 94.81 | 94.81 |
| KXG38813 | Sorghum | cytosol | 94.81 | 94.81 |
| Zm00001d014436_P001 | Maize | cytosol | 92.47 | 92.47 |
| TraesCS1B01G210900.1 | Wheat | cytosol, golgi | 85.97 | 85.97 |
| TraesCS1D01G199700.1 | Wheat | cytosol | 85.71 | 85.71 |
| TraesCS1A01G196300.1 | Wheat | cytosol, golgi | 85.45 | 85.45 |
| HORVU1Hr1G051120.1 | Barley | cytosol | 52.21 | 83.4 |
| VIT_02s0012g02660.t01 | Wine grape | cytosol | 80.52 | 80.31 |
| Zm00001d030126_P002 | Maize | endoplasmic reticulum, golgi, vacuole | 91.95 | 80.27 |
| GSMUA_Achr5P03630_001 | Banana | cytosol | 79.48 | 79.07 |
| Solyc05g053140.2.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 78.96 | 78.76 |
| GSMUA_Achr2P09740_001 | Banana | cytoskeleton, cytosol, peroxisome | 78.96 | 78.55 |
| GSMUA_Achr7P06760_001 | Banana | cytosol, nucleus, plastid | 40.78 | 78.5 |
| PGSC0003DMT400069954 | Potato | cytosol | 78.7 | 78.5 |
| HORVU2Hr1G034690.3 | Barley | mitochondrion | 85.45 | 77.78 |
| PGSC0003DMT400062813 | Potato | cytosol | 77.92 | 77.72 |
| KRH74300 | Soybean | cytosol | 77.66 | 77.46 |
| KRH39622 | Soybean | cytosol | 77.4 | 77.2 |
| CDX76502 | Canola | cytosol | 77.4 | 77.2 |
| Bra020980.1-P | Field mustard | cytosol | 77.4 | 77.2 |
| Solyc09g090720.2.1 | Tomato | cytosol, nucleus | 77.14 | 76.94 |
| CDY69914 | Canola | cytosol, extracellular | 76.88 | 76.68 |
| AT5G45620.1 | Thale cress | cytosol | 74.81 | 74.61 |
| CDY39438 | Canola | cytosol | 73.51 | 73.32 |
| CDY69078 | Canola | cytosol | 73.25 | 73.06 |
| Bra025066.1-P | Field mustard | cytosol | 73.25 | 73.06 |
| CDX99654 | Canola | cytosol, mitochondrion, nucleus | 20.0 | 72.64 |
| AT4G19006.2 | Thale cress | cytosol | 77.14 | 67.65 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.6.2.2.8 | EntrezGene:4332055 | ProteinID:ABF94630.1 | EMBL:AK064850 | ProteinID:BAF11286.1 |
| ProteinID:BAS82956.1 | ProteinID:EEE58582.1 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006511 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008541 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0019538 | GO:GO:0043248 | InterPro:IPR000717 | EnsemblPlantsGene:Os03g0214600 | EnsemblPlants:Os03t0214600-01 | InterPro:PCI_dom |
| PFAM:PF01399 | PFscan:PS50250 | InterPro:PSMD13 | PANTHER:PTHR10539 | PANTHER:PTHR10539:SF2 | UniProt:Q10Q05 |
| SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI0000DB4C99 | InterPro:WH_DNA-bd_sf | RefSeq:XP_015630519.1 |
| SEG:seg | : | : | : | : | : |
Description
19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 9BSimilar to 26S proteasome subunit-like protein (26S proteasome subunit RPN9a). (Os03t0214600-01);Similar to 26S proteasome non-ATPase regulatory subunit 13. (Os03t0214600-02)
Coordinates
chr3:+:5999908..6003675
Molecular Weight (calculated)
43671.8 Da
IEP (calculated)
5.435
GRAVY (calculated)
-0.001
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MALQFVESQR EARPELADPY ADLADLYQRK LWHQLTLKLD HFLQLPAAQT GDTLIQLYNN FITDFETKIN LLKLAHFAVI ASRQYPDKDA AISFLEGVIT
101: KLRETKDLRI NEPILYVKMQ IAAINLEKGN QKECKKLLDE GKSTLDSMTD VDPTVHASLY WISSQYHKAR QEFAEFYKNA LLYLAYTTVE SLSESFKLDL
201: AFDLSLAALL GDNIYNFGEL LAHPIINSLI GTKVEWVYHM LQAFNTGNLA LYQELCRVHN AALSAQPALV QNERKLLEKI NILCLMEIIF SRASEDRTIP
301: LSVIAERTKL SISDVEYLLM KSLSVHLIEG IIDEVDSTVH VSWVQPRVLG IPQVKALRER LDAWVGKVHT TLLSVEAETP DLVAA
101: KLRETKDLRI NEPILYVKMQ IAAINLEKGN QKECKKLLDE GKSTLDSMTD VDPTVHASLY WISSQYHKAR QEFAEFYKNA LLYLAYTTVE SLSESFKLDL
201: AFDLSLAALL GDNIYNFGEL LAHPIINSLI GTKVEWVYHM LQAFNTGNLA LYQELCRVHN AALSAQPALV QNERKLLEKI NILCLMEIIF SRASEDRTIP
301: LSVIAERTKL SISDVEYLLM KSLSVHLIEG IIDEVDSTVH VSWVQPRVLG IPQVKALRER LDAWVGKVHT TLLSVEAETP DLVAA
001: MAALQYLESQ KNAHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALSVFQ AGDALIQLYN NFITDFETRI NLLKLAHFAV VVSRQYPEKE AAVSYLEGVI
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA
Arabidopsis Description
Proteasome component (PCI) domain protein [Source:TAIR;Acc:AT4G19006]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.