Factsheet for Os01t0511300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0758000-01
Os06t0219500-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45620.1	Os02t0758000-01	AT4G25200.1	21798944
AT5G45620.1	Os06t0219500-00	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0214600-01	Rice	cytosol	94.81	94.81
KXG38813	Sorghum	cytosol	94.81	94.81
Zm00001d014436_P001	Maize	cytosol	92.99	92.99
TraesCS1B01G210900.1	Wheat	cytosol, golgi	86.23	86.23
TraesCS1A01G196300.1	Wheat	cytosol, golgi	86.23	86.23
TraesCS1D01G199700.1	Wheat	cytosol	85.97	85.97
HORVU1Hr1G051120.1	Barley	cytosol	52.47	83.82
Zm00001d030126_P002	Maize	endoplasmic reticulum, golgi, vacuole	92.73	80.95
VIT_02s0012g02660.t01	Wine grape	cytosol	79.22	79.02
Solyc05g053140.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	78.44	78.24
HORVU2Hr1G034690.3	Barley	mitochondrion	85.71	78.01
GSMUA_Achr7P06760_001	Banana	cytosol, nucleus, plastid	40.52	78.0
PGSC0003DMT400069954	Potato	cytosol	78.18	77.98
GSMUA_Achr5P03630_001	Banana	cytosol	77.66	77.26
GSMUA_Achr2P09740_001	Banana	cytoskeleton, cytosol, peroxisome	77.4	77.0
KRH39622	Soybean	cytosol	76.88	76.68
KRH74300	Soybean	cytosol	76.62	76.42
PGSC0003DMT400062813	Potato	cytosol	76.62	76.42
CDX76502	Canola	cytosol	76.62	76.42
Bra020980.1-P	Field mustard	cytosol	76.62	76.42
CDY69914	Canola	cytosol, extracellular	76.1	75.91
Solyc09g090720.2.1	Tomato	cytosol, nucleus	75.84	75.65
CDX99654	Canola	cytosol, mitochondrion, nucleus	20.26	73.58
AT5G45620.1	Thale cress	cytosol	73.51	73.32
CDY39438	Canola	cytosol	72.21	72.02
CDY69078	Canola	cytosol	71.95	71.76
Bra025066.1-P	Field mustard	cytosol	71.95	71.76
AT4G19006.2	Thale cress	cytosol	75.58	66.29

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.8	EntrezGene:4324031	ProteinID:BAB60911.1	ProteinID:BAB92196.1	ProteinID:BAF05086.1
ProteinID:BAS72382.1	ProteinID:EAZ12092.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0008541	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	GO:GO:0043248	InterPro:IPR000717	EnsemblPlantsGene:Os01g0511300	EnsemblPlants:Os01t0511300-01	InterPro:PCI_dom
PFAM:PF01399	PFscan:PS50250	InterPro:PSMD13	PANTHER:PTHR10539	PANTHER:PTHR10539:SF2	UniProt:Q94E72
SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI00000ABBD7	InterPro:WH_DNA-bd_sf	RefSeq:XP_015622388.1
SEG:seg	:	:	:	:	:

Description

19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 9AProteasome component region PCI domain containing protein. (Os01t0511300-01)

Coordinates

chr1:-:17999387..18002863

Molecular Weight (calculated)

43640.7 Da

IEP (calculated)

5.284

GRAVY (calculated)

-0.017

Length

385 amino acids

Sequence
(BLAST)

001: MALQYVEAQR QARPDLADAY ADLADLYQRK LWHQLTLKLD HFLQLPAAQT GDTIIQLYNN FISDFETKIN LLKLAHFAVI ASRQYPDKDA AISFLEGVTA
101: KLRETRERRI DEPVLYVKMQ IAAINLEKGD QKECKKLLDE GKSTLDSMTD VDPTVHASFY WISSQYHKAC QEFAEFYKNA LLYLAYTTVE SLSESFKLDL
201: AFDLSLAALL GDNIYNFGEL LAHPIINSLI GTKVEWVYHM LQAFNTGNLA LYQELCKVHN AALSAQPALV QNERKLLEKI NILCLMEIIF TRPSEDRTIP
301: LSVIAERTKL SISDVEYLLM KSLSVHLIEG IIDEVDSTVH VSWVQPRVLG IPQVKALRER LDAWVGKVHT TLLSVEAETP DLVAA

Best Arabidopsis Sequence Match ( AT4G19006.1 )
(BLAST)

001: MAALQYLESQ KNAHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALSVFQ AGDALIQLYN NFITDFETRI NLLKLAHFAV VVSRQYPEKE AAVSYLEGVI
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA

Arabidopsis Description

Proteasome component (PCI) domain protein [Source:TAIR;Acc:AT4G19006]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.