CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76502	Canola	cytosol	98.45	98.45
CDY39438	Canola	cytosol	90.67	90.67
CDY69078	Canola	cytosol	90.41	90.41
VIT_02s0012g02660.t01	Wine grape	cytosol	83.94	83.94
CDX99654	Canola	cytosol, mitochondrion, nucleus	22.8	83.02
AT4G19006.2	Thale cress	cytosol	94.3	82.92
KRH39622	Soybean	cytosol	82.64	82.64
KRH74300	Soybean	cytosol	82.12	82.12
Solyc05g053140.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	81.87	81.87
PGSC0003DMT400069954	Potato	cytosol	81.87	81.87
PGSC0003DMT400062813	Potato	cytosol	81.35	81.35
Solyc09g090720.2.1	Tomato	cytosol, nucleus	80.05	80.05
GSMUA_Achr7P06760_001	Banana	cytosol, nucleus, plastid	40.67	78.5
GSMUA_Achr2P09740_001	Banana	cytoskeleton, cytosol, peroxisome	77.2	77.0
Os03t0214600-01	Rice	cytosol	76.68	76.88
Zm00001d014436_P001	Maize	cytosol	76.42	76.62
GSMUA_Achr5P03630_001	Banana	cytosol	76.68	76.49
Os01t0511300-01	Rice	cytosol, plasma membrane	75.91	76.1
HORVU2Hr1G102810.3	Barley	cytosol	73.58	73.39
TraesCS1B01G210900.1	Wheat	cytosol, golgi	68.39	68.57
TraesCS1D01G199700.1	Wheat	cytosol	68.39	68.57
TraesCS1A01G196300.1	Wheat	cytosol, golgi	68.13	68.31
Zm00001d030126_P002	Maize	endoplasmic reticulum, golgi, vacuole	76.17	66.67
Zm00001d002455_P001	Maize	cytosol, golgi	55.44	64.07
HORVU1Hr1G051120.1	Barley	cytosol	39.64	63.49
HORVU2Hr1G034690.3	Barley	mitochondrion	68.13	62.17
TraesCS1B01G327800.1	Wheat	mitochondrion	32.38	53.19
OQU82238	Sorghum	extracellular	20.21	46.43

Protein Annotations

EnsemblPlants:CDY69914	EnsemblPlantsGene:GSBRNA2T00093412001	Gene3D:1.25.40.570	InterPro:IPR000717	InterPro:PCI_dom	InterPro:PSMD13
InterPro:WH_DNA-bd_sf	PANTHER:PTHR10539	PANTHER:PTHR10539:SF2	PFAM:PF01399	PFscan:PS50250	ProteinID:CDY69914
ProteinID:CDY69914.1	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0004EB467D	UniProt:A0A078JSV8
MapMan:19.2.6.2.2.8	:	:	:	:	:

Description

BnaCnng65930DBnaCnng65930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JSV8]

Coordinates

chrLK040672:+:1163..3277

Molecular Weight (calculated)

43960.8 Da

IEP (calculated)

4.976

GRAVY (calculated)

-0.027

Length

386 amino acids

Sequence
(BLAST)

001: MAALQYLESQ KNAHPELTEW YNSLADLYQK KLWHQLTVKL EQFIALPVFQ AGDALIQLYN NFITDFETKI NLLKLAHFAV VVSRQYPEKE AAVSYLQGVI
101: EKLRATKESR ISEPVSYVET QIALFKLEQG DQKECKKILD DVKTSLDSMT DIDPSVYANF FCVSSQYHKF RQEFSDFYKN ALLYLAYTSV ESLSESFKLD
201: LAFELSLSAL LGENIYNFGE LLAHPVLKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NAALSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GIIDQVDGTV HVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA

Best Arabidopsis Sequence Match ( AT4G19006.1 )
(BLAST)

001: MAALQYLESQ KNAHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALSVFQ AGDALIQLYN NFITDFETRI NLLKLAHFAV VVSRQYPEKE AAVSYLEGVI
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA

Arabidopsis Description

Proteasome component (PCI) domain protein [Source:TAIR;Acc:AT4G19006]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.