CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89437
CDY03368

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45620.1	CDX89437	AT4G25200.1	21798944
AT5G45620.1	CDY03368	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P06760_001	Banana	cytosol, nucleus, plastid	73.58	39.0
OQU82238	Sorghum	extracellular	50.94	32.14
CDY39438	Canola	cytosol	87.74	24.09
CDY69078	Canola	cytosol	87.74	24.09
CDX76502	Canola	cytosol	83.02	22.8
CDY69914	Canola	cytosol, extracellular	83.02	22.8
AT5G45620.1	Thale cress	cytosol	83.02	22.8
Solyc05g053140.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	78.3	21.5
PGSC0003DMT400069954	Potato	cytosol	77.36	21.24
PGSC0003DMT400062813	Potato	cytosol	77.36	21.24
VIT_02s0012g02660.t01	Wine grape	cytosol	76.42	20.98
Solyc09g090720.2.1	Tomato	cytosol, nucleus	75.47	20.73
Os01t0511300-01	Rice	cytosol, plasma membrane	73.58	20.26
Zm00001d014436_P001	Maize	cytosol	73.58	20.26
KRH74300	Soybean	cytosol	73.58	20.21
KRH39622	Soybean	cytosol	73.58	20.21
Os03t0214600-01	Rice	cytosol	72.64	20.0
GSMUA_Achr2P09740_001	Banana	cytoskeleton, cytosol, peroxisome	70.75	19.38
HORVU2Hr1G102810.3	Barley	cytosol	69.81	19.12
GSMUA_Achr5P03630_001	Banana	cytosol	69.81	19.12
Zm00001d002455_P001	Maize	cytosol, golgi	58.49	18.56
Zm00001d030126_P002	Maize	endoplasmic reticulum, golgi, vacuole	73.58	17.69
TraesCS1A01G196300.1	Wheat	cytosol, golgi	52.83	14.55
TraesCS1B01G210900.1	Wheat	cytosol, golgi	52.83	14.55
TraesCS1D01G199700.1	Wheat	cytosol	52.83	14.55
HORVU2Hr1G034690.3	Barley	mitochondrion	52.83	13.24
TraesCS1B01G327800.1	Wheat	mitochondrion	1.89	0.85
HORVU1Hr1G051120.1	Barley	cytosol	0.94	0.41

Protein Annotations

EnsemblPlants:CDX99654	EnsemblPlantsGene:GSBRNA2T00108169001	Gene3D:1.25.40.570	InterPro:IPR000717	InterPro:PCI_dom	InterPro:PSMD13
InterPro:WH_DNA-bd_sf	PANTHER:PTHR10539	PANTHER:PTHR10539:SF2	PFAM:PF01399	PFscan:PS50250	ProteinID:CDX99654
ProteinID:CDX99654.1	SUPFAM:SSF46785	UniParc:UPI0004EDC070	MapMan:35.1	:	:

Description

BnaC04g34110D

Coordinates

chrLK031912:+:684239..685376

Molecular Weight (calculated)

11962.6 Da

IEP (calculated)

5.616

GRAVY (calculated)

0.103

Length

106 amino acids

Sequence
(BLAST)

001: MKTLFLSKFV YCRPAEDRTI PLTVIAERTK LSIEDAEHLL MKSLSVHLIE GFIDQVNGTV YISWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET
101: PDLVAA

Best Arabidopsis Sequence Match ( AT4G19006.1 )
(BLAST)

001: MAALQYLESQ KNAHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALSVFQ AGDALIQLYN NFITDFETRI NLLKLAHFAV VVSRQYPEKE AAVSYLEGVI
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA

Arabidopsis Description

Proteasome component (PCI) domain protein [Source:TAIR;Acc:AT4G19006]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.