Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G210900.1 | Wheat | cytosol, golgi | 93.36 | 58.44 |
| TraesCS1A01G196300.1 | Wheat | cytosol, golgi | 93.36 | 58.44 |
| TraesCS1D01G199700.1 | Wheat | cytosol | 92.95 | 58.18 |
| KXG38813 | Sorghum | cytosol | 85.89 | 53.77 |
| Zm00001d014436_P001 | Maize | cytosol | 85.48 | 53.51 |
| HORVU2Hr1G034690.3 | Barley | mitochondrion | 93.78 | 53.43 |
| Os01t0511300-01 | Rice | cytosol, plasma membrane | 83.82 | 52.47 |
| Os03t0214600-01 | Rice | cytosol | 83.4 | 52.21 |
| Zm00001d030126_P002 | Maize | endoplasmic reticulum, golgi, vacuole | 84.65 | 46.26 |
| GSMUA_Achr2P09740_001 | Banana | cytoskeleton, cytosol, peroxisome | 71.37 | 44.44 |
| GSMUA_Achr5P03630_001 | Banana | cytosol | 71.37 | 44.44 |
| VIT_02s0012g02660.t01 | Wine grape | cytosol | 69.71 | 43.52 |
| Solyc05g053140.2.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 68.88 | 43.01 |
| PGSC0003DMT400069954 | Potato | cytosol | 68.05 | 42.49 |
| KRH74300 | Soybean | cytosol | 68.05 | 42.49 |
| KRH39622 | Soybean | cytosol | 67.63 | 42.23 |
| PGSC0003DMT400062813 | Potato | cytosol | 67.22 | 41.97 |
| HORVU2Hr1G102810.3 | Barley | cytosol | 67.22 | 41.86 |
| Solyc09g090720.2.1 | Tomato | cytosol, nucleus | 66.39 | 41.45 |
| CDY69914 | Canola | cytosol, extracellular | 63.49 | 39.64 |
| CDX76502 | Canola | cytosol | 63.49 | 39.64 |
| Bra020980.1-P | Field mustard | cytosol | 63.49 | 39.64 |
| CDY69078 | Canola | cytosol | 61.83 | 38.6 |
| Bra025066.1-P | Field mustard | cytosol | 61.83 | 38.6 |
| AT5G45620.1 | Thale cress | cytosol | 61.83 | 38.6 |
| CDY39438 | Canola | cytosol | 61.41 | 38.34 |
| AT4G19006.2 | Thale cress | cytosol | 65.15 | 35.76 |
| GSMUA_Achr7P06760_001 | Banana | cytosol, nucleus, plastid | 11.2 | 13.5 |
| CDX99654 | Canola | cytosol, mitochondrion, nucleus | 0.41 | 0.94 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G051120.1 | EnsemblPlantsGene:HORVU1Hr1G051120 | Gene3D:1.25.40.570 | InterPro:PSMD13 | PANTHER:PTHR10539 | PANTHER:PTHR10539:SF2 |
| SEG:seg | UniParc:UPI000B47C6AC | UniProt:A0A287FJ03 | MapMan:19.2.6.2.2.8 | : | : |
Description
No Description!
Coordinates
chrchr1H:+:379331607..379332912
Molecular Weight (calculated)
26059.2 Da
IEP (calculated)
5.291
GRAVY (calculated)
-0.122
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MALQYVEAQR QARPDLADWY ADLADLYQRK LWHQLTLKLD QFLQIPAAQT GDTLIQLYNN FISDFETKIN LLKLAQFAVI ASRQYPDKDA AIAFLEGIIT
101: KLRETRELRI NEPILHVKMQ IAAIHLDKGN HKECKNLLEE GKTTLDGMTD VDPTVHASFY WISSQYHKSL QEFAEFYKNA LLYLAYTTVG SLSDSFKLDL
201: AFDLSLAALL GDNIYNFGEL LAHPILNSXX XXXXXXXXXX X
101: KLRETRELRI NEPILHVKMQ IAAIHLDKGN HKECKNLLEE GKTTLDGMTD VDPTVHASFY WISSQYHKSL QEFAEFYKNA LLYLAYTTVG SLSDSFKLDL
201: AFDLSLAALL GDNIYNFGEL LAHPILNSXX XXXXXXXXXX X
001: MAALQYLESQ KNAHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALSVFQ AGDALIQLYN NFITDFETRI NLLKLAHFAV VVSRQYPEKE AAVSYLEGVI
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA
Arabidopsis Description
Proteasome component (PCI) domain protein [Source:TAIR;Acc:AT4G19006]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.